Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPS entry

There are 5 chains in PDB entry 8HPS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 15	GLY 299
B	ASP 6	ALA 269
C	ALA 2	ASP 391
D	ALA 2	ASP 391
E	GLY 29	PRO 465

There are 83 helices in PDB entry 8HPS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	50	Right-handed alpha
Helix 2	AA2	A	67	75	Right-handed alpha
Helix 3	AA3	A	76	111	Right-handed alpha
Helix 4	AA4	A	115	122	Right-handed alpha
Helix 5	AA5	A	123	128	Right-handed 310
Helix 6	AA6	A	129	142	Right-handed alpha
Helix 7	AA7	A	148	152	Right-handed 310
Helix 8	AA8	A	157	160	Right-handed 310
Helix 9	AA9	A	161	190	Right-handed alpha
Helix 10	AB1	A	193	202	Right-handed alpha
Helix 11	AB2	A	208	214	Right-handed alpha
Helix 12	AB3	A	214	235	Right-handed alpha
Helix 13	AB4	A	238	243	Right-handed alpha
Helix 14	AB5	A	253	263	Right-handed alpha
Helix 15	AB6	A	267	272	Right-handed alpha
Helix 16	AB7	A	272	294	Right-handed alpha
Helix 17	AB8	B	7	37	Right-handed alpha
Helix 18	AB9	B	54	62	Right-handed alpha
Helix 19	AC1	B	64	98	Right-handed alpha
Helix 20	AC2	B	103	116	Right-handed alpha
Helix 21	AC3	B	117	133	Right-handed alpha
Helix 22	AC4	B	138	162	Right-handed alpha
Helix 23	AC5	B	165	175	Right-handed alpha
Helix 24	AC6	B	178	186	Right-handed alpha
Helix 25	AC7	B	186	191	Right-handed alpha
Helix 26	AC8	B	191	208	Right-handed alpha
Helix 27	AC9	B	210	216	Right-handed alpha
Helix 28	AD1	B	224	229	Right-handed alpha
Helix 29	AD2	B	241	253	Right-handed alpha
Helix 30	AD3	B	253	264	Right-handed alpha
Helix 31	AD4	B	265	267	Right-handed 310
Helix 32	AD5	C	46	55	Right-handed alpha
Helix 33	AD6	C	76	81	Right-handed alpha
Helix 34	AD7	C	96	108	Right-handed alpha
Helix 35	AD8	C	111	127	Right-handed alpha
Helix 36	AD9	C	135	139	Right-handed 310
Helix 37	AE1	C	140	155	Right-handed alpha
Helix 38	AE2	C	170	188	Right-handed alpha
Helix 39	AE3	C	198	206	Right-handed alpha
Helix 40	AE4	C	222	229	Right-handed alpha
Helix 41	AE5	C	232	237	Right-handed alpha
Helix 42	AE6	C	266	276	Right-handed alpha
Helix 43	AE7	C	287	289	Right-handed 310
Helix 44	AE8	C	295	297	Right-handed 310
Helix 45	AE9	C	298	304	Right-handed alpha
Helix 46	AF1	D	46	56	Right-handed alpha
Helix 47	AF2	D	76	81	Right-handed alpha
Helix 48	AF3	D	96	108	Right-handed alpha
Helix 49	AF4	D	111	126	Right-handed alpha
Helix 50	AF5	D	135	139	Right-handed 310
Helix 51	AF6	D	140	155	Right-handed alpha
Helix 52	AF7	D	170	188	Right-handed alpha
Helix 53	AF8	D	198	206	Right-handed alpha
Helix 54	AF9	D	222	229	Right-handed alpha
Helix 55	AG1	D	232	239	Right-handed alpha
Helix 56	AG2	D	266	276	Right-handed alpha
Helix 57	AG3	D	287	289	Right-handed 310
Helix 58	AG4	D	295	297	Right-handed 310
Helix 59	AG5	D	298	303	Right-handed alpha
Helix 60	AG6	D	374	377	Right-handed 310
Helix 61	AG7	E	37	39	Right-handed 310
Helix 62	AG8	E	40	55	Right-handed alpha
Helix 63	AG9	E	69	83	Right-handed alpha
Helix 64	AH1	E	97	104	Right-handed alpha
Helix 65	AH2	E	109	113	Right-handed 310
Helix 66	AH3	E	117	122	Right-handed alpha
Helix 67	AH4	E	127	134	Right-handed alpha
Helix 68	AH5	E	165	180	Right-handed alpha
Helix 69	AH6	E	192	206	Right-handed alpha
Helix 70	AH7	E	223	243	Right-handed alpha
Helix 71	AH8	E	249	253	Right-handed 310
Helix 72	AH9	E	254	264	Right-handed alpha
Helix 73	AI1	E	275	286	Right-handed alpha
Helix 74	AI2	E	293	297	Right-handed 310
Helix 75	AI3	E	313	326	Right-handed alpha
Helix 76	AI4	E	359	371	Right-handed alpha
Helix 77	AI5	E	372	382	Right-handed alpha
Helix 78	AI6	E	389	394	Right-handed 310
Helix 79	AI7	E	395	402	Right-handed alpha
Helix 80	AI8	E	404	414	Right-handed alpha
Helix 81	AI9	E	423	436	Right-handed alpha
Helix 82	AJ1	E	437	441	Right-handed 310
Helix 83	AJ2	E	442	460	Right-handed alpha

There are 13 sheets in PDB entry 8HPS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	31	first strand
Strand 2	C	4	13	anti-parallel
Strand 3	C	62	67	anti-parallel
Strand 4	C	70	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	85	first strand
Strand 2	C	160	163	parallel
Strand 3	C	192	195	parallel
Strand 4	C	36	40	parallel
Strand 5	C	208	213	parallel
Strand 6	C	216	221	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	261	264	first strand
Strand 2	C	255	258	anti-parallel
Strand 3	C	245	252	anti-parallel
Strand 4	C	282	286	anti-parallel
Strand 5	C	378	381	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	367	373	anti-parallel
Strand 3	C	305	317	anti-parallel
Strand 4	C	321	326	anti-parallel
Strand 5	C	353	357	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	31	first strand
Strand 2	D	4	13	anti-parallel
Strand 3	D	62	67	anti-parallel
Strand 4	D	70	71	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	85	first strand
Strand 2	D	159	163	parallel
Strand 3	D	191	195	parallel
Strand 4	D	36	40	parallel
Strand 5	D	208	213	parallel
Strand 6	D	216	221	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	264	first strand
Strand 2	D	255	257	anti-parallel
Strand 3	D	245	252	anti-parallel
Strand 4	D	282	286	anti-parallel
Strand 5	D	378	381	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	367	372	anti-parallel
Strand 3	D	306	311	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	325	first strand
Strand 2	D	353	357	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	65	first strand
Strand 2	E	30	36	parallel
Strand 3	E	90	94	parallel
Strand 4	E	347	354	anti-parallel
Strand 5	E	107	108	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	59	65	first strand
Strand 2	E	30	36	parallel
Strand 3	E	90	94	parallel
Strand 4	E	347	354	anti-parallel
Strand 5	E	143	148	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	136	first strand
Strand 2	E	139	140	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	186	first strand
Strand 2	E	267	272	parallel
Strand 3	E	151	154	anti-parallel
Strand 4	E	329	331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPS