Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPT entry

There are 6 chains in PDB entry 8HPT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 36	SER 315
D	LYS 402	PRO 403
B	LEU 5	TYR 354
C	GLU 3	ASN 340
G	ALA 7	ARG 62
H	ASP 1	LYS 248

There are 31 helices in PDB entry 8HPT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	63	Right-handed alpha
Helix 2	AA2	A	64	65	Right-handed 310
Helix 3	AA3	A	69	69	Right-handed 310
Helix 4	AA4	A	70	87	Right-handed alpha
Helix 5	AA5	A	88	98	Right-handed alpha
Helix 6	AA6	A	106	110	Right-handed 310
Helix 7	AA7	A	111	140	Right-handed alpha
Helix 8	AA8	A	142	147	Right-handed alpha
Helix 9	AA9	A	149	174	Right-handed alpha
Helix 10	AB1	A	202	231	Right-handed alpha
Helix 11	AB2	A	232	237	Right-handed 310
Helix 12	AB3	A	239	266	Right-handed alpha
Helix 13	AB4	A	276	305	Right-handed alpha
Helix 14	AB5	A	305	315	Right-handed alpha
Helix 15	AB6	B	8	31	Right-handed alpha
Helix 16	AB7	B	45	53	Right-handed alpha
Helix 17	AB8	B	208	213	Right-handed alpha
Helix 18	AB9	B	214	217	Right-handed 310
Helix 19	AC1	B	246	256	Right-handed alpha
Helix 20	AC2	B	271	282	Right-handed alpha
Helix 21	AC3	B	296	310	Right-handed alpha
Helix 22	AC4	B	330	351	Right-handed alpha
Helix 23	AC5	C	4	25	Right-handed alpha
Helix 24	AC6	C	29	34	Right-handed alpha
Helix 25	AC7	G	8	23	Right-handed alpha
Helix 26	AC8	G	29	44	Right-handed alpha
Helix 27	AC9	G	45	48	Right-handed 310
Helix 28	AD1	H	28	32	Right-handed 310
Helix 29	AD2	H	62	65	Right-handed 310
Helix 30	AD3	H	87	91	Right-handed 310
Helix 31	AD4	H	220	224	Right-handed 310

There are 13 sheets in PDB entry 8HPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	196	201	anti-parallel
Strand 3	B	34	38	parallel
Strand 4	B	221	227	parallel
Strand 5	B	264	270	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	70	74	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	83	first strand
Strand 2	C	88	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	176	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	192	first strand
Strand 2	C	199	202	anti-parallel
Strand 3	C	208	210	anti-parallel
Strand 4	C	220	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	277	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	293	298	anti-parallel
Strand 4	C	303	309	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	70	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	93	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	243	247	parallel
Strand 3	H	226	230	anti-parallel
Strand 4	H	175	179	anti-parallel
Strand 5	H	186	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	160	first strand
Strand 2	H	211	216	anti-parallel
Strand 3	H	203	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPT