Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HPU entry

There are 5 chains in PDB entry 8HPU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 348	PRO 541
H	GLN 1	CYS 231
L	GLU 1	CYS 215
M	VAL 2	CYS 225
N	ASP 1	CYS 216

There are 17 helices in PDB entry 8HPU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	351	358	Right-handed alpha
Helix 2	AA2	A	363	367	Right-handed 310
Helix 3	AA3	A	379	385	Right-handed alpha
Helix 4	AA4	A	397	404	Right-handed 310
Helix 5	AA5	A	420	424	Right-handed 310
Helix 6	AA6	A	431	436	Right-handed alpha
Helix 7	AA7	H	88	92	Right-handed 310
Helix 8	AA8	H	171	173	Right-handed 310
Helix 9	AA9	H	200	204	Right-handed 310
Helix 10	AB1	L	30	32	Right-handed 310
Helix 11	AB2	L	183	188	Right-handed alpha
Helix 12	AB3	M	61	64	Right-handed 310
Helix 13	AB4	M	86	90	Right-handed 310
Helix 14	AB5	M	165	167	Right-handed 310
Helix 15	AB6	M	196	201	Right-handed alpha
Helix 16	AB7	N	123	128	Right-handed alpha
Helix 17	AB8	N	185	190	Right-handed alpha

There are 23 sheets in PDB entry 8HPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	368	372	first strand
Strand 2	A	409	416	anti-parallel
Strand 3	A	522	529	anti-parallel
Strand 4	A	445	451	anti-parallel
Strand 5	A	390	393	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	466	468	first strand
Strand 2	A	506	508	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	487	488	first strand
Strand 2	A	502	503	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	79	84	anti-parallel
Strand 4	H	69	74	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	35	41	anti-parallel
Strand 5	H	48	53	anti-parallel
Strand 6	H	59	61	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	93	102	anti-parallel
Strand 4	H	113	118	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	191	199	anti-parallel
Strand 4	H	179	180	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	191	199	anti-parallel
Strand 4	H	184	185	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	169	first strand
Strand 2	H	209	215	anti-parallel
Strand 3	H	220	226	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	71	76	anti-parallel
Strand 4	L	63	68	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	103	106	parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	34	39	anti-parallel
Strand 5	L	46	50	anti-parallel
Strand 6	L	54	55	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	115	119	first strand
Strand 2	L	131	140	anti-parallel
Strand 3	L	174	182	anti-parallel
Strand 4	L	160	164	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	145	151	first strand
Strand 2	L	192	199	anti-parallel
Strand 3	L	206	211	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	7	first strand
Strand 2	M	17	25	anti-parallel
Strand 3	M	77	83	anti-parallel
Strand 4	M	67	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	116	120	parallel
Strand 3	M	91	100	anti-parallel
Strand 4	M	33	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	57	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	116	120	parallel
Strand 3	M	91	100	anti-parallel
Strand 4	M	105	112	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	133	first strand
Strand 2	M	145	154	anti-parallel
Strand 3	M	185	193	anti-parallel
Strand 4	M	172	174	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	129	133	first strand
Strand 2	M	145	154	anti-parallel
Strand 3	M	185	193	anti-parallel
Strand 4	M	178	179	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	160	163	first strand
Strand 2	M	203	209	anti-parallel
Strand 3	M	214	220	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	7	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	70	75	anti-parallel
Strand 4	N	62	67	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	13	first strand
Strand 2	N	104	108	parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	33	38	anti-parallel
Strand 5	N	45	49	anti-parallel
Strand 6	N	53	54	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	116	120	first strand
Strand 2	N	131	141	anti-parallel
Strand 3	N	175	184	anti-parallel
Strand 4	N	161	166	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	155	157	first strand
Strand 2	N	146	152	anti-parallel
Strand 3	N	193	200	anti-parallel
Strand 4	N	207	212	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HPU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPU