Analysis of interatomic Contacts of Structural Units in PDB entry:
8HPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HPW entry

There are 3 chains in PDB entry 8HPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 41CYS 221
B
 LYS 41CYS 221
C
 LYS 41CYS 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 8HPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
178 180Right-handed 310
Helix 2
AA2
A
181 191Right-handed alpha
Helix 3
AA3
A
215 220Right-handed 310
Helix 4
AA4
B
178 191Right-handed alpha
Helix 5
AA5
C
178 180Right-handed 310
Helix 6
AA6
C
181 191Right-handed alpha
Helix 7
AA7
C
215 219Right-handed 310
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There are 8 sheets in PDB entry 8HPW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
52 56anti-parallel
Strand 3
A
71 75parallel
Strand 4
A
95 99parallel
Strand 5
A
119 123parallel
Strand 6
A
143 145parallel
Strand 7
A
167 169parallel
Strand 8
A
194 195parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
102 106parallel
Strand 3
A
126 130parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 176first strand
Strand 2
A
200 202parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 48first strand
Strand 2
B
52 56anti-parallel
Strand 3
B
71 75parallel
Strand 4
B
95 99parallel
Strand 5
B
119 123parallel
Strand 6
B
143 145parallel
Strand 7
B
167 169parallel
Strand 8
B
194 195parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 82first strand
Strand 2
B
102 106parallel
Strand 3
B
126 130parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 176first strand
Strand 2
B
200 202parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
46 48first strand
Strand 2
C
52 56anti-parallel
Strand 3
C
71 75parallel
Strand 4
C
95 99parallel
Strand 5
C
119 123parallel
Strand 6
C
143 145parallel
Strand 7
C
167 169parallel
Strand 8
C
194 195parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 103first strand
Strand 2
C
126 127parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il