Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HQC entry

There are 6 chains in PDB entry 8HQC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 24	SER 315
B	LEU 5	TYR 354
C	GLU 3	ASN 340
D	THR 1	ARG 74
G	ALA 7	ARG 62
H	ASP 1	LEU 247

There are 41 helices in PDB entry 8HQC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	39	Right-handed 310
Helix 2	AA2	A	40	62	Right-handed alpha
Helix 3	AA3	A	63	67	Right-handed 310
Helix 4	AA4	A	69	71	Right-handed 310
Helix 5	AA5	A	72	96	Right-handed alpha
Helix 6	AA6	A	106	110	Right-handed 310
Helix 7	AA7	A	111	140	Right-handed alpha
Helix 8	AA8	A	142	147	Right-handed alpha
Helix 9	AA9	A	149	175	Right-handed alpha
Helix 10	AB1	A	202	234	Right-handed alpha
Helix 11	AB2	A	239	269	Right-handed alpha
Helix 12	AB3	A	273	275	Right-handed 310
Helix 13	AB4	A	276	289	Right-handed alpha
Helix 14	AB5	A	289	303	Right-handed alpha
Helix 15	AB6	A	308	315	Right-handed alpha
Helix 16	AB7	B	9	31	Right-handed alpha
Helix 17	AB8	B	45	53	Right-handed alpha
Helix 18	AB9	B	208	213	Right-handed alpha
Helix 19	AC1	B	214	217	Right-handed 310
Helix 20	AC2	B	246	256	Right-handed alpha
Helix 21	AC3	B	258	262	Right-handed 310
Helix 22	AC4	B	271	282	Right-handed alpha
Helix 23	AC5	B	283	287	Right-handed 310
Helix 24	AC6	B	296	311	Right-handed alpha
Helix 25	AC7	B	330	351	Right-handed alpha
Helix 26	AC8	C	4	25	Right-handed alpha
Helix 27	AC9	C	29	34	Right-handed alpha
Helix 28	AD1	C	35	37	Right-handed 310
Helix 29	AD2	D	2	11	Right-handed alpha
Helix 30	AD3	D	15	26	Right-handed alpha
Helix 31	AD4	D	33	38	Right-handed alpha
Helix 32	AD5	D	39	41	Right-handed 310
Helix 33	AD6	D	44	63	Right-handed alpha
Helix 34	AD7	G	8	24	Right-handed alpha
Helix 35	AD8	G	29	45	Right-handed alpha
Helix 36	AD9	G	46	48	Right-handed 310
Helix 37	AE1	H	28	32	Right-handed 310
Helix 38	AE2	H	53	56	Right-handed 310
Helix 39	AE3	H	74	76	Right-handed 310
Helix 40	AE4	H	87	91	Right-handed 310
Helix 41	AE5	H	220	224	Right-handed 310

There are 12 sheets in PDB entry 8HQC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	192	first strand
Strand 2	B	195	201	anti-parallel
Strand 3	B	34	39	parallel
Strand 4	B	221	227	parallel
Strand 5	B	264	270	parallel
Strand 6	B	319	323	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	51	first strand
Strand 2	C	336	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	139	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	165	170	anti-parallel
Strand 4	C	176	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	208	212	anti-parallel
Strand 4	C	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	259	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	273	278	first strand
Strand 2	C	284	289	anti-parallel
Strand 3	C	294	298	anti-parallel
Strand 4	C	306	307	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	142	first strand
Strand 2	H	155	161	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	203	208	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	148	first strand
Strand 2	H	243	246	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	186	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HQC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQC