Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HQL entry

There are 5 chains in PDB entry 8HQL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 505GLU 626
B
 MET 505LEU 625
C
 MET 505GLU 626
D
 MET 505LEU 625
E
 MET 505LEU 625
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8HQL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
506 510Right-handed 310
Helix 2
AA2
A
553 567Right-handed alpha
Helix 3
AA3
A
568 573Right-handed 310
Helix 4
AA4
A
587 607Right-handed alpha
Helix 5
AA5
A
608 612Right-handed 310
Helix 6
AA6
A
614 622Right-handed alpha
Helix 7
AA7
B
506 510Right-handed 310
Helix 8
AA8
B
553 567Right-handed alpha
Helix 9
AA9
B
568 573Right-handed 310
Helix 10
AB1
B
587 607Right-handed alpha
Helix 11
AB2
B
608 612Right-handed 310
Helix 12
AB3
B
614 622Right-handed alpha
Helix 13
AB4
C
506 510Right-handed 310
Helix 14
AB5
C
553 567Right-handed alpha
Helix 15
AB6
C
568 573Right-handed 310
Helix 16
AB7
C
580 584Right-handed 310
Helix 17
AB8
C
587 607Right-handed alpha
Helix 18
AB9
C
608 612Right-handed 310
Helix 19
AC1
C
614 622Right-handed alpha
Helix 20
AC2
D
506 510Right-handed 310
Helix 21
AC3
D
553 567Right-handed alpha
Helix 22
AC4
D
568 573Right-handed 310
Helix 23
AC5
D
587 607Right-handed alpha
Helix 24
AC6
D
608 612Right-handed 310
Helix 25
AC7
D
614 622Right-handed alpha
Helix 26
AC8
E
506 510Right-handed 310
Helix 27
AC9
E
553 567Right-handed alpha
Helix 28
AD1
E
568 573Right-handed 310
Helix 29
AD2
E
587 607Right-handed alpha
Helix 30
AD3
E
608 612Right-handed 310
Helix 31
AD4
E
614 622Right-handed alpha
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There are 5 sheets in PDB entry 8HQL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 522first strand
Strand 2
A
525 535anti-parallel
Strand 3
A
546 552anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
511 522first strand
Strand 2
B
525 535anti-parallel
Strand 3
B
546 552anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
511 522first strand
Strand 2
C
525 535anti-parallel
Strand 3
C
546 552anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
511 522first strand
Strand 2
D
525 535anti-parallel
Strand 3
D
546 552anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
511 522first strand
Strand 2
E
525 535anti-parallel
Strand 3
E
546 552anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il