Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HQM entry

There are 5 chains in PDB entry 8HQM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	MET 45	ASN 340
C	SER 8	ARG 62
H	ASP 1	LEU 235
R	SER 37	GLU 346
A	LEU 5	PHE 354

There are 24 helices in PDB entry 8HQM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	10	21	Right-handed alpha
Helix 2	AA2	C	29	45	Right-handed alpha
Helix 3	AA3	C	46	48	Right-handed 310
Helix 4	AA4	R	38	72	Right-handed alpha
Helix 5	AA5	R	75	87	Right-handed alpha
Helix 6	AA6	R	94	102	Right-handed alpha
Helix 7	AA7	R	112	145	Right-handed alpha
Helix 8	AA8	R	146	154	Right-handed alpha
Helix 9	AA9	R	155	180	Right-handed alpha
Helix 10	AB1	R	194	208	Right-handed alpha
Helix 11	AB2	R	208	228	Right-handed alpha
Helix 12	AB3	R	233	272	Right-handed alpha
Helix 13	AB4	R	279	312	Right-handed alpha
Helix 14	AB5	R	312	331	Right-handed alpha
Helix 15	AB6	R	334	346	Right-handed alpha
Helix 16	AB7	A	6	31	Right-handed alpha
Helix 17	AB8	A	45	54	Right-handed alpha
Helix 18	AB9	A	208	213	Right-handed alpha
Helix 19	AC1	A	214	216	Right-handed 310
Helix 20	AC2	A	241	255	Right-handed alpha
Helix 21	AC3	A	270	278	Right-handed alpha
Helix 22	AC4	A	287	291	Right-handed 310
Helix 23	AC5	A	295	310	Right-handed alpha
Helix 24	AC6	A	331	351	Right-handed alpha

There are 15 sheets in PDB entry 8HQM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	50	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	105	first strand
Strand 2	B	111	114	anti-parallel
Strand 3	B	121	125	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	151	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	191	first strand
Strand 2	B	198	202	anti-parallel
Strand 3	B	207	212	anti-parallel
Strand 4	B	217	223	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	234	first strand
Strand 2	B	240	244	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	285	289	anti-parallel
Strand 3	B	294	297	anti-parallel
Strand 4	B	306	308	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	119	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	93	99	anti-parallel
Strand 5	H	110	111	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	33	39	anti-parallel
Strand 4	H	93	99	anti-parallel
Strand 5	H	115	116	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	129	130	first strand
Strand 2	H	147	148	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	232	234	parallel
Strand 3	H	213	216	anti-parallel
Strand 4	H	164	166	anti-parallel
Strand 5	H	174	178	anti-parallel
Strand 6	H	182	183	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	143	145	first strand
Strand 2	H	200	204	anti-parallel
Strand 3	H	191	195	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	38	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	321	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HQM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQM