Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HQO entry

There are 11 chains in PDB entry 8HQO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	LEU 11	PRO 378
E	LEU 11	PRO 378
R	MET 1	VAL 170
S	MET 1	VAL 170
a	ASP 2	ARG 161
B	LEU 11	PRO 378
C	LEU 11	PRO 378
P	MET 1	VAL 170
Q	MET 1	VAL 170
b	ASP 2	ARG 161
x	MET 1	THR 80

There are 97 helices in PDB entry 8HQO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	14	22	Right-handed alpha
Helix 2	AA2	D	31	42	Right-handed alpha
Helix 3	AA3	D	42	57	Right-handed alpha
Helix 4	AA4	D	77	87	Right-handed alpha
Helix 5	AA5	D	94	109	Right-handed alpha
Helix 6	AA6	D	176	179	Right-handed 310
Helix 7	AA7	D	180	200	Right-handed alpha
Helix 8	AA8	D	215	231	Right-handed alpha
Helix 9	AA9	D	256	261	Right-handed 310
Helix 10	AB1	D	262	278	Right-handed alpha
Helix 11	AB2	D	280	286	Right-handed alpha
Helix 12	AB3	D	288	303	Right-handed alpha
Helix 13	AB4	D	303	320	Right-handed alpha
Helix 14	AB5	D	336	350	Right-handed alpha
Helix 15	AB6	D	354	362	Right-handed alpha
Helix 16	AB7	D	369	374	Right-handed 310
Helix 17	AB8	E	14	22	Right-handed alpha
Helix 18	AB9	E	31	42	Right-handed alpha
Helix 19	AC1	E	42	57	Right-handed alpha
Helix 20	AC2	E	77	87	Right-handed alpha
Helix 21	AC3	E	94	109	Right-handed alpha
Helix 22	AC4	E	176	179	Right-handed 310
Helix 23	AC5	E	180	200	Right-handed alpha
Helix 24	AC6	E	215	231	Right-handed alpha
Helix 25	AC7	E	256	261	Right-handed 310
Helix 26	AC8	E	262	278	Right-handed alpha
Helix 27	AC9	E	280	286	Right-handed alpha
Helix 28	AD1	E	288	303	Right-handed alpha
Helix 29	AD2	E	303	320	Right-handed alpha
Helix 30	AD3	E	336	350	Right-handed alpha
Helix 31	AD4	E	354	362	Right-handed alpha
Helix 32	AD5	E	369	374	Right-handed 310
Helix 33	AD6	R	5	14	Right-handed alpha
Helix 34	AD7	R	21	39	Right-handed alpha
Helix 35	AD8	R	81	83	Right-handed 310
Helix 36	AD9	R	117	133	Right-handed alpha
Helix 37	AE1	R	157	168	Right-handed alpha
Helix 38	AE2	S	5	14	Right-handed alpha
Helix 39	AE3	S	21	39	Right-handed alpha
Helix 40	AE4	S	81	83	Right-handed 310
Helix 41	AE5	S	117	133	Right-handed alpha
Helix 42	AE6	S	157	168	Right-handed alpha
Helix 43	AE7	a	3	20	Right-handed alpha
Helix 44	AE8	a	41	45	Right-handed 310
Helix 45	AE9	a	85	103	Right-handed alpha
Helix 46	AF1	a	156	161	Right-handed alpha
Helix 47	AF2	B	14	22	Right-handed alpha
Helix 48	AF3	B	31	42	Right-handed alpha
Helix 49	AF4	B	42	57	Right-handed alpha
Helix 50	AF5	B	77	87	Right-handed alpha
Helix 51	AF6	B	94	109	Right-handed alpha
Helix 52	AF7	B	176	179	Right-handed 310
Helix 53	AF8	B	180	200	Right-handed alpha
Helix 54	AF9	B	215	231	Right-handed alpha
Helix 55	AG1	B	256	261	Right-handed 310
Helix 56	AG2	B	262	278	Right-handed alpha
Helix 57	AG3	B	280	286	Right-handed alpha
Helix 58	AG4	B	288	303	Right-handed alpha
Helix 59	AG5	B	303	320	Right-handed alpha
Helix 60	AG6	B	336	350	Right-handed alpha
Helix 61	AG7	B	354	362	Right-handed alpha
Helix 62	AG8	B	369	374	Right-handed 310
Helix 63	AG9	C	14	22	Right-handed alpha
Helix 64	AH1	C	31	42	Right-handed alpha
Helix 65	AH2	C	42	57	Right-handed alpha
Helix 66	AH3	C	77	87	Right-handed alpha
Helix 67	AH4	C	94	109	Right-handed alpha
Helix 68	AH5	C	176	179	Right-handed 310
Helix 69	AH6	C	180	200	Right-handed alpha
Helix 70	AH7	C	215	231	Right-handed alpha
Helix 71	AH8	C	256	261	Right-handed 310
Helix 72	AH9	C	262	278	Right-handed alpha
Helix 73	AI1	C	280	286	Right-handed alpha
Helix 74	AI2	C	288	303	Right-handed alpha
Helix 75	AI3	C	303	320	Right-handed alpha
Helix 76	AI4	C	336	350	Right-handed alpha
Helix 77	AI5	C	354	362	Right-handed alpha
Helix 78	AI6	C	369	374	Right-handed 310
Helix 79	AI7	P	5	14	Right-handed alpha
Helix 80	AI8	P	21	39	Right-handed alpha
Helix 81	AI9	P	81	83	Right-handed 310
Helix 82	AJ1	P	117	133	Right-handed alpha
Helix 83	AJ2	P	157	168	Right-handed alpha
Helix 84	AJ3	Q	5	14	Right-handed alpha
Helix 85	AJ4	Q	21	39	Right-handed alpha
Helix 86	AJ5	Q	81	83	Right-handed 310
Helix 87	AJ6	Q	117	133	Right-handed alpha
Helix 88	AJ7	Q	157	168	Right-handed alpha
Helix 89	AJ8	b	3	20	Right-handed alpha
Helix 90	AJ9	b	41	45	Right-handed 310
Helix 91	AK1	b	85	103	Right-handed alpha
Helix 92	AK2	b	156	161	Right-handed alpha
Helix 93	AK3	x	2	15	Right-handed alpha
Helix 94	AK4	x	15	21	Right-handed alpha
Helix 95	AK5	x	22	34	Right-handed alpha
Helix 96	AK6	x	36	46	Right-handed alpha
Helix 97	AK7	x	49	80	Right-handed alpha

There are 33 sheets in PDB entry 8HQO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	66	first strand
Strand 2	D	321	326	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	121	124	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	155	159	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	129	133	first strand
Strand 2	D	139	144	anti-parallel
Strand 3	D	148	151	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	164	first strand
Strand 2	D	167	168	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	206	209	anti-parallel
Strand 3	E	239	242	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	66	first strand
Strand 2	E	321	326	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	121	124	first strand
Strand 2	E	111	116	anti-parallel
Strand 3	E	155	159	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	129	133	first strand
Strand 2	E	139	144	anti-parallel
Strand 3	E	148	151	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	163	164	first strand
Strand 2	E	167	168	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	247	248	first strand
Strand 2	E	206	209	anti-parallel
Strand 3	B	239	242	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	46	53	first strand
Strand 2	R	102	109	anti-parallel
Strand 3	R	69	75	anti-parallel
Strand 4	R	78	79	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	59	61	first strand
Strand 2	R	92	95	anti-parallel
Strand 3	R	85	88	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	139	140	first strand
Strand 2	R	147	148	anti-parallel
Strand 3	S	139	140	anti-parallel
Strand 4	S	147	148	anti-parallel
Strand 5	P	139	140	anti-parallel
Strand 6	P	147	148	anti-parallel
Strand 7	Q	139	140	anti-parallel
Strand 8	Q	147	148	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	46	53	first strand
Strand 2	S	102	109	anti-parallel
Strand 3	S	69	75	anti-parallel
Strand 4	S	78	79	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	59	61	first strand
Strand 2	S	92	95	anti-parallel
Strand 3	S	85	88	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	35	36	first strand
Strand 2	a	50	53	parallel
Strand 3	a	68	81	anti-parallel
Strand 4	a	58	62	anti-parallel
Strand 5	b	125	133	anti-parallel
Strand 6	b	141	152	anti-parallel
Strand 7	b	68	81	anti-parallel
Strand 8	b	50	53	anti-parallel
Strand 9	b	35	36	parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	125	133	first strand
Strand 2	a	141	152	anti-parallel
Strand 3	a	68	81	anti-parallel
Strand 4	a	58	62	anti-parallel
Strand 5	b	125	133	anti-parallel
Strand 6	b	141	152	anti-parallel
Strand 7	b	68	81	anti-parallel
Strand 8	b	58	62	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	108	112	first strand
Strand 2	a	118	122	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	66	first strand
Strand 2	B	321	326	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	124	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	155	159	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	129	133	first strand
Strand 2	B	139	144	anti-parallel
Strand 3	B	148	151	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	164	first strand
Strand 2	B	167	168	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	247	248	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	C	239	242	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	66	first strand
Strand 2	C	321	326	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	121	124	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	155	159	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	133	first strand
Strand 2	C	139	144	anti-parallel
Strand 3	C	148	151	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	164	first strand
Strand 2	C	167	168	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	209	first strand
Strand 2	C	247	248	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	46	53	first strand
Strand 2	P	102	109	anti-parallel
Strand 3	P	69	75	anti-parallel
Strand 4	P	78	79	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	59	61	first strand
Strand 2	P	92	95	anti-parallel
Strand 3	P	85	88	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	46	53	first strand
Strand 2	Q	102	109	anti-parallel
Strand 3	Q	69	75	anti-parallel
Strand 4	Q	78	79	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	59	61	first strand
Strand 2	Q	92	95	anti-parallel
Strand 3	Q	85	88	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	108	112	first strand
Strand 2	b	118	122	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HQO

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQO