Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HQQ entry

There is 1 chain in PDB entry 8HQQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 21LEU 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8HQQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 50Right-handed alpha
Helix 2
AA2
A
61 63Right-handed 310
Helix 3
AA3
A
64 77Right-handed alpha
Helix 4
AA4
A
88 97Right-handed alpha
Helix 5
AA5
A
105 113Right-handed alpha
Helix 6
AA6
A
114 117Right-handed 310
Helix 7
AA7
A
119 126Right-handed alpha
Helix 8
AA8
A
151 157Right-handed alpha
Helix 9
AA9
A
164 178Right-handed alpha
Helix 10
AB1
A
188 205Right-handed alpha
Helix 11
AB2
A
205 214Right-handed alpha
Helix 12
AB3
A
217 222Right-handed alpha
Helix 13
AB4
A
223 239Right-handed alpha
Helix 14
AB5
A
248 258Right-handed alpha
Helix 15
AB6
A
268 277Right-handed alpha
Helix 16
AB7
A
310 325Right-handed alpha
Helix 17
AB8
A
326 338Right-handed alpha
Helix 18
AB9
A
352 368Right-handed alpha
Helix 19
AC1
A
382 398Right-handed alpha
Helix 20
AC2
A
402 417Right-handed alpha
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There are 4 sheets in PDB entry 8HQQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 58first strand
Strand 2
A
24 29parallel
Strand 3
A
83 86parallel
Strand 4
A
302 305anti-parallel
Strand 5
A
136 138anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
133 134anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
140 143anti-parallel
Strand 3
A
296 299anti-parallel
Strand 4
A
371 373parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
261 265parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
285 289anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il