Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HQR entry

There are 2 chains in PDB entry 8HQR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 15MET 281
B
 ASP 22MET 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8HQR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
46 60Right-handed alpha
Helix 2
AA2
A
72 79Right-handed alpha
Helix 3
AA3
A
92 97Right-handed alpha
Helix 4
AA4
A
118 123Right-handed 310
Helix 5
AA5
A
135 150Right-handed alpha
Helix 6
AA6
A
160 168Right-handed alpha
Helix 7
AA7
A
181 191Right-handed alpha
Helix 8
AA8
A
201 212Right-handed alpha
Helix 9
AA9
A
224 228Right-handed 310
Helix 10
AB1
A
241 265Right-handed alpha
Helix 11
AB2
A
265 276Right-handed alpha
Helix 12
AB3
B
46 60Right-handed alpha
Helix 13
AB4
B
72 79Right-handed alpha
Helix 14
AB5
B
92 97Right-handed alpha
Helix 15
AB6
B
118 123Right-handed 310
Helix 16
AB7
B
135 150Right-handed alpha
Helix 17
AB8
B
160 168Right-handed alpha
Helix 18
AB9
B
181 191Right-handed alpha
Helix 19
AC1
B
201 212Right-handed alpha
Helix 20
AC2
B
224 228Right-handed 310
Helix 21
AC3
B
241 264Right-handed alpha
Helix 22
AC4
B
265 276Right-handed alpha
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There are 7 sheets in PDB entry 8HQR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 67first strand
Strand 2
A
24 28parallel
Strand 3
A
84 85parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
100 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
44 45anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 130first strand
Strand 2
A
215 223parallel
Strand 3
A
110 115anti-parallel
Strand 4
A
196 200anti-parallel
Strand 5
A
153 157parallel
Strand 6
A
175 179parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 67first strand
Strand 2
B
24 28parallel
Strand 3
B
84 85parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
44 45anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
234 235anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 130first strand
Strand 2
B
215 223parallel
Strand 3
B
110 115anti-parallel
Strand 4
B
196 200anti-parallel
Strand 5
B
153 157parallel
Strand 6
B
175 179parallel
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