Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HQS entry

There are 4 chains in PDB entry 8HQS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	ASP 1093
B	ILE 12	PRO 1104
D	ASN 155	ARG 464
E	ASP 2	GLU 129

There are 98 helices in PDB entry 8HQS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	86	Right-handed alpha
Helix 2	AA2	A	89	93	Right-handed 310
Helix 3	AA3	A	98	103	Right-handed alpha
Helix 4	AA4	A	159	169	Right-handed alpha
Helix 5	AA5	A	181	190	Right-handed alpha
Helix 6	AA6	A	192	204	Right-handed alpha
Helix 7	AA7	A	206	230	Right-handed alpha
Helix 8	AA8	A	912	945	Right-handed alpha
Helix 9	AA9	A	960	964	Right-handed 310
Helix 10	AB1	A	987	1002	Right-handed alpha
Helix 11	AB2	A	1023	1038	Right-handed alpha
Helix 12	AB3	B	13	36	Right-handed alpha
Helix 13	AB4	B	116	127	Right-handed alpha
Helix 14	AB5	B	129	134	Right-handed alpha
Helix 15	AB6	B	138	143	Right-handed alpha
Helix 16	AB7	B	165	170	Right-handed alpha
Helix 17	AB8	B	201	212	Right-handed alpha
Helix 18	AB9	B	223	232	Right-handed alpha
Helix 19	AC1	B	235	247	Right-handed alpha
Helix 20	AC2	B	249	280	Right-handed alpha
Helix 21	AC3	B	940	984	Right-handed alpha
Helix 22	AC4	B	985	987	Right-handed 310
Helix 23	AC5	B	1020	1037	Right-handed alpha
Helix 24	AC6	B	1049	1054	Right-handed 310
Helix 25	AC7	B	1055	1071	Right-handed alpha
Helix 26	AC8	B	1084	1088	Right-handed 310
Helix 27	AC9	D	162	173	Right-handed alpha
Helix 28	AD1	D	181	190	Right-handed alpha
Helix 29	AD2	D	208	221	Right-handed alpha
Helix 30	AD3	D	235	243	Right-handed alpha
Helix 31	AD4	D	245	254	Right-handed alpha
Helix 32	AD5	D	256	262	Right-handed alpha
Helix 33	AD6	D	283	293	Right-handed alpha
Helix 34	AD7	D	300	316	Right-handed alpha
Helix 35	AD8	D	317	323	Right-handed alpha
Helix 36	AD9	D	328	338	Right-handed alpha
Helix 37	AE1	D	339	351	Right-handed alpha
Helix 38	AE2	D	355	366	Right-handed alpha
Helix 39	AE3	D	369	378	Right-handed alpha
Helix 40	AE4	D	387	403	Right-handed alpha
Helix 41	AE5	D	404	410	Right-handed alpha
Helix 42	AE6	D	412	414	Right-handed 310
Helix 43	AE7	D	427	441	Right-handed alpha
Helix 44	AE8	D	447	463	Right-handed alpha
Helix 45	AE9	E	25	41	Right-handed alpha
Helix 46	AF1	E	43	54	Right-handed alpha
Helix 47	AF2	E	65	76	Right-handed alpha
Helix 48	AF3	E	79	91	Right-handed alpha
Helix 49	AF4	E	99	117	Right-handed alpha
Helix 50	AF5	E	124	142	Right-handed alpha
Helix 51	AF6	E	190	195	Right-handed 310
Helix 52	AF7	E	203	209	Right-handed alpha
Helix 53	AF8	E	213	225	Right-handed alpha
Helix 54	AF9	E	229	239	Right-handed alpha
Helix 55	AG1	E	239	262	Right-handed alpha
Helix 56	AG2	E	270	278	Right-handed alpha
Helix 57	AG3	E	279	287	Right-handed alpha
Helix 58	AG4	E	292	302	Right-handed alpha
Helix 59	AG5	E	309	313	Right-handed 310
Helix 60	AG6	E	339	364	Right-handed alpha
Helix 61	AG7	E	377	391	Right-handed alpha
Helix 62	AG8	E	394	403	Right-handed alpha
Helix 63	AG9	E	413	430	Right-handed alpha
Helix 64	AH1	E	437	442	Right-handed alpha
Helix 65	AH2	E	444	458	Right-handed alpha
Helix 66	AH3	E	471	498	Right-handed alpha
Helix 67	AH4	E	505	529	Right-handed alpha
Helix 68	AH5	E	538	546	Right-handed alpha
Helix 69	AH6	F	13	28	Right-handed alpha
Helix 70	AH7	F	33	46	Right-handed alpha
Helix 71	AH8	F	56	79	Right-handed alpha
Helix 72	AH9	F	90	97	Right-handed alpha
Helix 73	AI1	F	151	168	Right-handed alpha
Helix 74	AI2	F	182	195	Right-handed alpha
Helix 75	AI3	F	214	219	Right-handed 310
Helix 76	AI4	F	223	237	Right-handed alpha
Helix 77	AI5	F	251	258	Right-handed alpha
Helix 78	AI6	F	260	265	Right-handed alpha
Helix 79	AI7	F	306	315	Right-handed alpha
Helix 80	AI8	G	8	25	Right-handed alpha
Helix 81	AI9	G	25	42	Right-handed alpha
Helix 82	AJ1	G	48	63	Right-handed alpha
Helix 83	AJ2	G	68	83	Right-handed alpha
Helix 84	AJ3	G	93	99	Right-handed alpha
Helix 85	AJ4	G	134	151	Right-handed alpha
Helix 86	AJ5	G	177	195	Right-handed alpha
Helix 87	AJ6	G	201	212	Right-handed alpha
Helix 88	AJ7	G	226	237	Right-handed alpha
Helix 89	AJ8	G	259	266	Right-handed alpha
Helix 90	AJ9	G	267	277	Right-handed alpha
Helix 91	AK1	G	282	286	Right-handed 310
Helix 92	AK2	G	289	298	Right-handed alpha
Helix 93	AK3	H	221	227	Right-handed alpha
Helix 94	AK4	H	241	245	Right-handed 310
Helix 95	AK5	H	308	313	Right-handed alpha
Helix 96	AK6	H	319	333	Right-handed alpha
Helix 97	AK7	H	359	373	Right-handed alpha
Helix 98	AK8	H	383	395	Right-handed alpha

There are 14 sheets in PDB entry 8HQS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	59	first strand
Strand 2	A	42	50	anti-parallel
Strand 3	A	109	117	anti-parallel
Strand 4	A	134	142	anti-parallel
Strand 5	A	149	152	anti-parallel
Strand 6	A	156	158	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1045	1046	first strand
Strand 2	A	65	68	parallel
Strand 3	A	1062	1065	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	179	180	first strand
Strand 2	A	1012	1013	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	953	956	first strand
Strand 2	A	965	968	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	B	82	88	anti-parallel
Strand 3	B	149	157	anti-parallel
Strand 4	B	172	180	anti-parallel
Strand 5	B	186	188	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	1043	1046	parallel
Strand 3	B	1076	1080	parallel
Strand 4	B	104	107	parallel
Strand 5	B	1096	1099	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	989	995	first strand
Strand 2	B	1000	1006	anti-parallel
Strand 3	B	1014	1015	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	198	199	first strand
Strand 2	D	274	275	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	81	83	first strand
Strand 2	F	134	136	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	206	208	first strand
Strand 2	F	334	336	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	240	242	first strand
Strand 2	F	248	250	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	122	127	anti-parallel
Strand 3	G	86	90	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	199	200	first strand
Strand 2	G	255	258	anti-parallel
Strand 3	G	240	243	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	305	306	first strand
Strand 2	H	347	350	anti-parallel
Strand 3	H	340	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HQS

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HQS