Analysis of interatomic Contacts of Structural Units in PDB entry:
8HR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HR0 entry

There are 4 chains in PDB entry 8HR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 3	ALA 764
B	GLU 346	LYS 1093
C	MET 1	LEU 157
D	HIS 527	ASP 529

There are 55 helices in PDB entry 8HR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	16	Right-handed alpha
Helix 2	AA2	A	27	33	Right-handed alpha
Helix 3	AA3	A	95	100	Right-handed 310
Helix 4	AA4	A	107	114	Right-handed 310
Helix 5	AA5	A	140	154	Right-handed alpha
Helix 6	AA6	A	155	157	Right-handed 310
Helix 7	AA7	A	196	205	Right-handed alpha
Helix 8	AA8	A	236	246	Right-handed alpha
Helix 9	AA9	A	263	277	Right-handed alpha
Helix 10	AB1	A	312	318	Right-handed alpha
Helix 11	AB2	A	323	342	Right-handed alpha
Helix 12	AB3	A	361	367	Right-handed alpha
Helix 13	AB4	A	379	388	Right-handed alpha
Helix 14	AB5	A	389	391	Right-handed 310
Helix 15	AB6	A	509	517	Right-handed alpha
Helix 16	AB7	A	518	536	Right-handed alpha
Helix 17	AB8	A	542	558	Right-handed alpha
Helix 18	AB9	A	575	586	Right-handed alpha
Helix 19	AC1	A	596	608	Right-handed alpha
Helix 20	AC2	A	611	620	Right-handed alpha
Helix 21	AC3	A	661	670	Right-handed alpha
Helix 22	AC4	A	679	685	Right-handed alpha
Helix 23	AC5	A	689	694	Right-handed alpha
Helix 24	AC6	A	715	722	Right-handed alpha
Helix 25	AC7	A	748	761	Right-handed alpha
Helix 26	AC8	B	373	378	Right-handed alpha
Helix 27	AC9	B	396	404	Right-handed alpha
Helix 28	AD1	B	476	479	Right-handed 310
Helix 29	AD2	B	480	485	Right-handed alpha
Helix 30	AD3	B	493	497	Right-handed 310
Helix 31	AD4	B	513	520	Right-handed alpha
Helix 32	AD5	B	520	532	Right-handed alpha
Helix 33	AD6	B	591	600	Right-handed alpha
Helix 34	AD7	B	601	605	Right-handed 310
Helix 35	AD8	B	615	628	Right-handed alpha
Helix 36	AD9	B	671	683	Right-handed alpha
Helix 37	AE1	B	698	703	Right-handed alpha
Helix 38	AE2	B	703	708	Right-handed alpha
Helix 39	AE3	B	724	741	Right-handed alpha
Helix 40	AE4	B	830	836	Right-handed alpha
Helix 41	AE5	B	839	858	Right-handed alpha
Helix 42	AE6	B	859	880	Right-handed alpha
Helix 43	AE7	B	895	897	Right-handed 310
Helix 44	AE8	B	898	909	Right-handed alpha
Helix 45	AE9	B	919	933	Right-handed alpha
Helix 46	AF1	B	934	943	Right-handed alpha
Helix 47	AF2	B	1001	1008	Right-handed alpha
Helix 48	AF3	B	1013	1017	Right-handed 310
Helix 49	AF4	B	1029	1044	Right-handed alpha
Helix 50	AF5	B	1079	1092	Right-handed alpha
Helix 51	AF6	C	30	44	Right-handed alpha
Helix 52	AF7	C	80	99	Right-handed alpha
Helix 53	AF8	C	100	103	Right-handed 310
Helix 54	AF9	C	115	125	Right-handed alpha
Helix 55	AG1	C	153	157	Right-handed alpha

There are 17 sheets in PDB entry 8HR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	492	503	parallel
Strand 3	A	116	120	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	492	503	parallel
Strand 3	A	476	486	anti-parallel
Strand 4	A	402	410	anti-parallel
Strand 5	A	445	448	anti-parallel
Strand 6	A	424	425	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	42	first strand
Strand 2	A	457	463	anti-parallel
Strand 3	A	414	420	anti-parallel
Strand 4	A	433	439	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	91	93	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	232	first strand
Strand 2	A	163	169	anti-parallel
Strand 3	A	172	176	anti-parallel
Strand 4	A	185	190	anti-parallel
Strand 5	B	566	570	parallel
Strand 6	B	553	557	anti-parallel
Strand 7	B	543	549	anti-parallel
Strand 8	B	585	587	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	374	first strand
Strand 2	A	344	350	parallel
Strand 3	A	285	290	parallel
Strand 4	A	130	136	parallel
Strand 5	A	163	169	parallel
Strand 6	A	172	176	anti-parallel
Strand 7	A	185	190	anti-parallel
Strand 8	B	566	570	parallel
Strand 9	B	553	557	anti-parallel
Strand 10	B	543	549	anti-parallel
Strand 11	B	505	511	parallel
Strand 12	B	632	638	parallel
Strand 13	B	685	691	parallel
Strand 14	B	714	715	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	561	first strand
Strand 2	A	564	569	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	622	623	first strand
Strand 2	A	650	651	anti-parallel
Strand 3	A	655	657	anti-parallel
Strand 4	A	704	705	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	660	first strand
Strand 2	A	708	709	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	352	first strand
Strand 2	B	891	893	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	386	388	first strand
Strand 2	B	408	411	anti-parallel
Strand 3	B	785	791	anti-parallel
Strand 4	B	757	763	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	816	828	parallel
Strand 3	B	487	490	anti-parallel
Strand 4	B	422	423	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	816	828	parallel
Strand 3	B	800	811	anti-parallel
Strand 4	B	744	753	anti-parallel
Strand 5	B	773	779	anti-parallel
Strand 6	B	767	769	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	443	444	first strand
Strand 2	B	449	451	anti-parallel
Strand 3	B	458	460	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	945	948	first strand
Strand 2	B	984	987	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	991	993	first strand
Strand 2	B	1051	1053	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	19	first strand
Strand 2	C	5	9	anti-parallel
Strand 3	C	69	75	anti-parallel
Strand 4	C	59	66	anti-parallel
Strand 5	C	51	56	anti-parallel
Strand 6	C	150	152	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HR0