Analysis of interatomic Contacts of Structural Units in PDB entry:
8HR5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HR5 entry

There are 5 chains in PDB entry 8HR5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 491
B
 MET 1PRO 276
C
 A 24 G 228
D
 T 11 T 27
E
 A 2 T 6
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8HR5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 53Right-handed alpha
Helix 2
AA2
A
53 81Right-handed alpha
Helix 3
AA3
A
106 131Right-handed alpha
Helix 4
AA4
A
136 145Right-handed alpha
Helix 5
AA5
A
148 153Right-handed alpha
Helix 6
AA6
A
154 156Right-handed 310
Helix 7
AA7
A
162 182Right-handed alpha
Helix 8
AA8
A
202 206Right-handed 310
Helix 9
AA9
A
237 249Right-handed alpha
Helix 10
AB1
A
315 340Right-handed alpha
Helix 11
AB2
A
341 344Right-handed 310
Helix 12
AB3
A
345 382Right-handed alpha
Helix 13
AB4
A
407 422Right-handed alpha
Helix 14
AB5
A
465 477Right-handed alpha
Helix 15
AB6
B
14 52Right-handed alpha
Helix 16
AB7
B
54 79Right-handed alpha
Helix 17
AB8
B
109 148Right-handed alpha
Helix 18
AB9
B
161 181Right-handed alpha
Helix 19
AC1
B
202 206Right-handed 310
Helix 20
AC2
B
238 249Right-handed alpha
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There are 5 sheets in PDB entry 8HR5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
267 274anti-parallel
Strand 4
A
2 11anti-parallel
Strand 5
A
226 228anti-parallel
Strand 6
A
216 219anti-parallel
Strand 7
A
207 210anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
257 261anti-parallel
Strand 3
A
267 274anti-parallel
Strand 4
A
253 254anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 302first strand
Strand 2
A
288 292anti-parallel
Strand 3
A
386 390parallel
Strand 4
A
425 429parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 456first strand
Strand 2
A
463 464anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 201first strand
Strand 2
B
257 260anti-parallel
Strand 3
B
268 273anti-parallel
Strand 4
B
3 11anti-parallel
Strand 5
B
224 228anti-parallel
Strand 6
B
217 220anti-parallel
Strand 7
B
207 209anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il