Analysis of interatomic Contacts of Structural Units in PDB entry:
8HRF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HRF entry

There are 2 chains in PDB entry 8HRF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 22	GLY 590
B	ALA 22	ALA 588

There are 47 helices in PDB entry 8HRF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	35	Right-handed 310
Helix 2	AA2	A	50	54	Right-handed alpha
Helix 3	AA3	A	168	171	Right-handed 310
Helix 4	AA4	A	176	180	Right-handed 310
Helix 5	AA5	A	181	185	Right-handed 310
Helix 6	AA6	A	199	204	Right-handed 310
Helix 7	AA7	A	208	218	Right-handed alpha
Helix 8	AA8	A	229	235	Right-handed alpha
Helix 9	AA9	A	238	242	Right-handed 310
Helix 10	AB1	A	250	263	Right-handed alpha
Helix 11	AB2	A	278	284	Right-handed 310
Helix 12	AB3	A	286	304	Right-handed alpha
Helix 13	AB4	A	331	355	Right-handed alpha
Helix 14	AB5	A	367	372	Right-handed alpha
Helix 15	AB6	A	375	381	Right-handed alpha
Helix 16	AB7	A	436	448	Right-handed alpha
Helix 17	AB8	A	450	452	Right-handed 310
Helix 18	AB9	A	469	473	Right-handed 310
Helix 19	AC1	A	478	482	Right-handed 310
Helix 20	AC2	A	491	495	Right-handed 310
Helix 21	AC3	A	504	511	Right-handed alpha
Helix 22	AC4	A	548	563	Right-handed alpha
Helix 23	AC5	A	571	575	Right-handed 310
Helix 24	AC6	A	577	588	Right-handed alpha
Helix 25	AC7	B	30	35	Right-handed 310
Helix 26	AC8	B	168	171	Right-handed 310
Helix 27	AC9	B	176	180	Right-handed 310
Helix 28	AD1	B	181	185	Right-handed 310
Helix 29	AD2	B	199	206	Right-handed 310
Helix 30	AD3	B	208	217	Right-handed alpha
Helix 31	AD4	B	229	235	Right-handed alpha
Helix 32	AD5	B	238	242	Right-handed 310
Helix 33	AD6	B	250	263	Right-handed alpha
Helix 34	AD7	B	278	284	Right-handed 310
Helix 35	AD8	B	286	304	Right-handed alpha
Helix 36	AD9	B	331	355	Right-handed alpha
Helix 37	AE1	B	367	372	Right-handed alpha
Helix 38	AE2	B	373	374	Right-handed 310
Helix 39	AE3	B	375	383	Right-handed 310
Helix 40	AE4	B	436	447	Right-handed alpha
Helix 41	AE5	B	450	452	Right-handed 310
Helix 42	AE6	B	469	473	Right-handed 310
Helix 43	AE7	B	478	482	Right-handed 310
Helix 44	AE8	B	504	511	Right-handed alpha
Helix 45	AE9	B	548	563	Right-handed alpha
Helix 46	AF1	B	571	575	Right-handed 310
Helix 47	AF2	B	577	587	Right-handed alpha

There are 14 sheets in PDB entry 8HRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	61	68	anti-parallel
Strand 3	A	96	103	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	127	132	parallel
Strand 3	A	107	117	anti-parallel
Strand 4	A	77	82	anti-parallel
Strand 5	A	85	91	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	39	first strand
Strand 2	A	127	132	parallel
Strand 3	A	107	117	anti-parallel
Strand 4	A	120	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	55	57	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	160	166	first strand
Strand 2	A	187	193	parallel
Strand 3	A	267	273	parallel
Strand 4	A	309	313	parallel
Strand 5	A	359	364	parallel
Strand 6	A	385	388	parallel
Strand 7	A	454	459	parallel
Strand 8	A	566	570	parallel
Strand 9	A	160	166	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	461	466	anti-parallel
Strand 3	A	501	503	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	487	first strand
Strand 2	A	461	466	anti-parallel
Strand 3	A	542	545	anti-parallel
Strand 4	A	532	537	anti-parallel
Strand 5	A	522	527	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	61	68	anti-parallel
Strand 3	B	96	103	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	127	132	parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	78	82	anti-parallel
Strand 5	B	85	90	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	39	first strand
Strand 2	B	127	132	parallel
Strand 3	B	107	116	anti-parallel
Strand 4	B	121	123	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	55	57	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	166	first strand
Strand 2	B	187	193	parallel
Strand 3	B	267	274	parallel
Strand 4	B	309	314	parallel
Strand 5	B	359	364	parallel
Strand 6	B	385	388	parallel
Strand 7	B	454	459	parallel
Strand 8	B	566	570	parallel
Strand 9	B	160	166	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	461	466	anti-parallel
Strand 3	B	501	503	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	487	first strand
Strand 2	B	461	466	anti-parallel
Strand 3	B	542	545	anti-parallel
Strand 4	B	532	537	anti-parallel
Strand 5	B	523	527	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HRF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HRF