Analysis of interatomic Contacts of Structural Units in PDB entry:
8HRH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HRH entry

There are 21 chains in PDB entry 8HRH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 1VAL 18
A
LEU 20VAL 37
A
GLN 39GLY 66
A
ALA 68ASP 73
A
SER 75ALA 119
A
THR 121VAL 147
A
GLY 149ASP 212
A
ILE 215ARG 218
B
ASP 1GLN 43
B
PRO 45PRO 49
B
LEU 51TYR 54
B
VAL 56LEU 78
B
ILE 80ILE 111
B
ARG 113PRO 146
B
ASP 148VAL 151
B
TRP 153TRP 153
B
ILE 155SER 173
B
ASP 175THR 187
B
ASP 189HIS 203
B
THR 205VAL 211
B
SER 213GLU 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8HRH. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
61 65Right-handed 310
Helix 3
AA3
A
87 91Right-handed 310
Helix 4
AA4
A
161 163Right-handed 310
Helix 5
AA5
A
205 208Right-handed 310
Helix 6
AA6
B
84 88Right-handed 310
Helix 7
AA7
B
126 132Right-handed alpha
Helix 8
AA8
B
188 192Right-handed alpha
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There are 11 sheets in PDB entry 8HRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
3 6first strand
Strand 2
A
18 25anti-parallel
Strand 3
A
78 83anti-parallel
Strand 4
A
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 12first strand
Strand 2
A
112 116parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
33 39anti-parallel
Strand 5
A
45 51anti-parallel
Strand 6
A
58 59anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 12first strand
Strand 2
A
112 116parallel
Strand 3
A
92 100anti-parallel
Strand 4
A
104 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
125 129first strand
Strand 2
A
140 150anti-parallel
Strand 3
A
179 189anti-parallel
Strand 4
A
168 170anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
125 129first strand
Strand 2
A
140 150anti-parallel
Strand 3
A
179 189anti-parallel
Strand 4
A
174 176anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
156 159first strand
Strand 2
A
199 204anti-parallel
Strand 3
A
209 214anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
19 25anti-parallel
Strand 3
B
75 80anti-parallel
Strand 4
B
67 72anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 14first strand
Strand 2
B
107 112parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
38 43anti-parallel
Strand 5
B
50 54anti-parallel
Strand 6
B
58 59anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 14first strand
Strand 2
B
107 112parallel
Strand 3
B
89 95anti-parallel
Strand 4
B
102 103anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 123first strand
Strand 2
B
134 144anti-parallel
Strand 3
B
178 187anti-parallel
Strand 4
B
164 168anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
158 160first strand
Strand 2
B
149 155anti-parallel
Strand 3
B
196 203anti-parallel
Strand 4
B
210 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il