Analysis of interatomic Contacts of Structural Units in PDB entry:
8HRO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HRO entry

There are 2 chains in PDB entry 8HRO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2GLU 336
B
 THR 2LEU 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8HRO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 25Right-handed alpha
Helix 2
AA2
A
38 47Right-handed alpha
Helix 3
AA3
A
80 84Right-handed 310
Helix 4
AA4
A
85 90Right-handed 310
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
108 113Right-handed alpha
Helix 7
AA7
A
136 140Right-handed 310
Helix 8
AA8
A
152 170Right-handed alpha
Helix 9
AA9
A
201 205Right-handed 310
Helix 10
AB1
A
214 218Right-handed 310
Helix 11
AB2
A
221 225Right-handed 310
Helix 12
AB3
A
254 266Right-handed alpha
Helix 13
AB4
A
269 272Right-handed 310
Helix 14
AB5
A
282 286Right-handed 310
Helix 15
AB6
A
298 300Right-handed 310
Helix 16
AB7
A
316 331Right-handed alpha
Helix 17
AB8
B
11 25Right-handed alpha
Helix 18
AB9
B
38 48Right-handed alpha
Helix 19
AC1
B
80 84Right-handed 310
Helix 20
AC2
B
103 108Right-handed alpha
Helix 21
AC3
B
108 113Right-handed alpha
Helix 22
AC4
B
136 140Right-handed 310
Helix 23
AC5
B
152 169Right-handed alpha
Helix 24
AC6
B
214 220Right-handed 310
Helix 25
AC7
B
221 225Right-handed 310
Helix 26
AC8
B
254 266Right-handed alpha
Helix 27
AC9
B
269 272Right-handed 310
Helix 28
AD1
B
282 286Right-handed 310
Helix 29
AD2
B
298 300Right-handed 310
Helix 30
AD3
B
316 333Right-handed alpha
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There are 7 sheets in PDB entry 8HRO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
65 68anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
28 34parallel
Strand 5
A
3 8parallel
Strand 6
A
93 96parallel
Strand 7
A
117 120parallel
Strand 8
A
147 149parallel
Strand 9
A
129 130parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
53 54anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
171 181parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
306 313anti-parallel
Strand 6
A
293 296anti-parallel
Strand 7
A
274 277parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 210first strand
Strand 2
A
228 235anti-parallel
Strand 3
A
171 181parallel
Strand 4
A
241 249anti-parallel
Strand 5
A
306 313anti-parallel
Strand 6
A
301 303anti-parallel
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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
65 68anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
28 34parallel
Strand 5
B
3 8parallel
Strand 6
B
93 96parallel
Strand 7
B
117 120parallel
Strand 8
B
147 149parallel
Strand 9
B
129 130parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
228 235anti-parallel
Strand 3
B
173 181parallel
Strand 4
B
241 248anti-parallel
Strand 5
B
306 313anti-parallel
Strand 6
B
293 296anti-parallel
Strand 7
B
274 277parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 210first strand
Strand 2
B
228 235anti-parallel
Strand 3
B
173 181parallel
Strand 4
B
241 248anti-parallel
Strand 5
B
306 313anti-parallel
Strand 6
B
301 303anti-parallel
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