Analysis of interatomic Contacts of Structural Units in PDB entry:
8HRT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HRT entry

There are 4 chains in PDB entry 8HRT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	GLU 336
B	THR 2	HIS 337
C	THR 2	GLU 336
D	THR 2	LEU 335

There are 62 helices in PDB entry 8HRT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	25	Right-handed alpha
Helix 2	AA2	A	38	48	Right-handed alpha
Helix 3	AA3	A	80	84	Right-handed 310
Helix 4	AA4	A	86	90	Right-handed 310
Helix 5	AA5	A	103	108	Right-handed alpha
Helix 6	AA6	A	108	113	Right-handed alpha
Helix 7	AA7	A	136	140	Right-handed 310
Helix 8	AA8	A	152	170	Right-handed alpha
Helix 9	AA9	A	214	220	Right-handed 310
Helix 10	AB1	A	221	225	Right-handed 310
Helix 11	AB2	A	254	266	Right-handed alpha
Helix 12	AB3	A	269	272	Right-handed 310
Helix 13	AB4	A	282	287	Right-handed 310
Helix 14	AB5	A	298	300	Right-handed 310
Helix 15	AB6	A	316	333	Right-handed alpha
Helix 16	AB7	B	11	25	Right-handed alpha
Helix 17	AB8	B	38	48	Right-handed alpha
Helix 18	AB9	B	80	84	Right-handed 310
Helix 19	AC1	B	86	90	Right-handed 310
Helix 20	AC2	B	103	108	Right-handed alpha
Helix 21	AC3	B	108	113	Right-handed alpha
Helix 22	AC4	B	136	140	Right-handed 310
Helix 23	AC5	B	152	170	Right-handed alpha
Helix 24	AC6	B	201	205	Right-handed 310
Helix 25	AC7	B	216	221	Right-handed alpha
Helix 26	AC8	B	222	225	Right-handed 310
Helix 27	AC9	B	254	266	Right-handed alpha
Helix 28	AD1	B	269	272	Right-handed 310
Helix 29	AD2	B	282	286	Right-handed 310
Helix 30	AD3	B	298	300	Right-handed 310
Helix 31	AD4	B	316	333	Right-handed alpha
Helix 32	AD5	C	11	25	Right-handed alpha
Helix 33	AD6	C	38	48	Right-handed alpha
Helix 34	AD7	C	80	84	Right-handed 310
Helix 35	AD8	C	86	90	Right-handed 310
Helix 36	AD9	C	103	108	Right-handed alpha
Helix 37	AE1	C	108	113	Right-handed alpha
Helix 38	AE2	C	136	140	Right-handed 310
Helix 39	AE3	C	152	170	Right-handed alpha
Helix 40	AE4	C	201	205	Right-handed 310
Helix 41	AE5	C	216	221	Right-handed alpha
Helix 42	AE6	C	222	225	Right-handed 310
Helix 43	AE7	C	254	266	Right-handed alpha
Helix 44	AE8	C	269	272	Right-handed 310
Helix 45	AE9	C	282	287	Right-handed 310
Helix 46	AF1	C	298	300	Right-handed 310
Helix 47	AF2	C	316	332	Right-handed alpha
Helix 48	AF3	D	11	25	Right-handed alpha
Helix 49	AF4	D	38	48	Right-handed alpha
Helix 50	AF5	D	80	84	Right-handed 310
Helix 51	AF6	D	86	90	Right-handed 310
Helix 52	AF7	D	103	108	Right-handed alpha
Helix 53	AF8	D	108	113	Right-handed alpha
Helix 54	AF9	D	136	140	Right-handed 310
Helix 55	AG1	D	152	170	Right-handed alpha
Helix 56	AG2	D	201	205	Right-handed 310
Helix 57	AG3	D	221	225	Right-handed 310
Helix 58	AG4	D	254	266	Right-handed alpha
Helix 59	AG5	D	269	272	Right-handed 310
Helix 60	AG6	D	282	287	Right-handed 310
Helix 61	AG7	D	298	300	Right-handed 310
Helix 62	AG8	D	316	333	Right-handed alpha

There are 12 sheets in PDB entry 8HRT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	65	68	anti-parallel
Strand 3	A	71	76	anti-parallel
Strand 4	A	28	34	parallel
Strand 5	A	3	8	parallel
Strand 6	A	93	96	parallel
Strand 7	A	117	120	parallel
Strand 8	A	147	149	parallel
Strand 9	A	129	130	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	173	181	parallel
Strand 4	A	241	248	anti-parallel
Strand 5	A	306	313	anti-parallel
Strand 6	A	293	296	anti-parallel
Strand 7	A	274	277	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	207	210	first strand
Strand 2	A	228	235	anti-parallel
Strand 3	A	173	181	parallel
Strand 4	A	241	248	anti-parallel
Strand 5	A	306	313	anti-parallel
Strand 6	A	301	303	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	65	68	anti-parallel
Strand 3	B	71	76	anti-parallel
Strand 4	B	28	34	parallel
Strand 5	B	3	8	parallel
Strand 6	B	93	96	parallel
Strand 7	B	117	120	parallel
Strand 8	B	147	149	parallel
Strand 9	B	129	130	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	173	181	parallel
Strand 4	B	241	248	anti-parallel
Strand 5	B	306	313	anti-parallel
Strand 6	B	293	296	anti-parallel
Strand 7	B	274	277	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	228	235	anti-parallel
Strand 3	B	173	181	parallel
Strand 4	B	241	248	anti-parallel
Strand 5	B	306	313	anti-parallel
Strand 6	B	301	303	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	61	first strand
Strand 2	C	65	68	anti-parallel
Strand 3	C	71	76	anti-parallel
Strand 4	C	28	34	parallel
Strand 5	C	3	8	parallel
Strand 6	C	93	96	parallel
Strand 7	C	117	120	parallel
Strand 8	C	147	149	parallel
Strand 9	C	129	130	parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	228	235	anti-parallel
Strand 3	C	173	181	parallel
Strand 4	C	241	248	anti-parallel
Strand 5	C	306	313	anti-parallel
Strand 6	C	293	296	anti-parallel
Strand 7	C	274	277	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	209	first strand
Strand 2	C	228	235	anti-parallel
Strand 3	C	173	181	parallel
Strand 4	C	241	248	anti-parallel
Strand 5	C	306	313	anti-parallel
Strand 6	C	301	303	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	59	61	first strand
Strand 2	D	65	68	anti-parallel
Strand 3	D	71	76	anti-parallel
Strand 4	D	28	34	parallel
Strand 5	D	3	8	parallel
Strand 6	D	93	96	parallel
Strand 7	D	117	120	parallel
Strand 8	D	147	149	parallel
Strand 9	D	129	130	parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	228	235	anti-parallel
Strand 3	D	173	181	parallel
Strand 4	D	241	248	anti-parallel
Strand 5	D	306	313	anti-parallel
Strand 6	D	293	296	anti-parallel
Strand 7	D	274	277	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	209	first strand
Strand 2	D	228	235	anti-parallel
Strand 3	D	173	181	parallel
Strand 4	D	241	248	anti-parallel
Strand 5	D	306	313	anti-parallel
Strand 6	D	301	303	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HRT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HRT