Analysis of interatomic Contacts of Structural Units in PDB entry:
8HS0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HS0 entry

There is 1 chain in PDB entry 8HS0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3GLU 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8HS0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 28Right-handed alpha
Helix 2
AA2
A
29 31Right-handed 310
Helix 3
AA3
A
32 42Right-handed alpha
Helix 4
AA4
A
47 51Right-handed 310
Helix 5
AA5
A
69 84Right-handed alpha
Helix 6
AA6
A
97 102Right-handed alpha
Helix 7
AA7
A
104 108Right-handed 310
Helix 8
AA8
A
109 129Right-handed alpha
Helix 9
AA9
A
141 154Right-handed alpha
Helix 10
AB1
A
176 189Right-handed alpha
Helix 11
AB2
A
193 204Right-handed alpha
Helix 12
AB3
A
215 227Right-handed alpha
Helix 13
AB4
A
241 262Right-handed alpha
Helix 14
AB5
A
264 269Right-handed alpha
Helix 15
AB6
A
270 285Right-handed alpha
Helix 16
AB7
A
288 301Right-handed alpha
Helix 17
AB8
A
306 317Right-handed alpha
Helix 18
AB9
A
330 337Right-handed alpha
Helix 19
AC1
A
338 350Right-handed alpha
Helix 20
AC2
A
364 371Right-handed alpha
Helix 21
AC3
A
428 439Right-handed alpha
Helix 22
AC4
A
440 444Right-handed 310
Helix 23
AC5
A
465 474Right-handed alpha
Helix 24
AC6
A
503 507Right-handed 310
Helix 25
AC7
A
508 513Right-handed 310
Helix 26
AC8
A
533 543Right-handed alpha
Helix 27
AC9
A
553 563Right-handed alpha
Helix 28
AD1
A
565 569Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 8HS0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 92first strand
Strand 2
A
53 58parallel
Strand 3
A
132 136parallel
Strand 4
A
157 159parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 170first strand
Strand 2
A
173 175anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
408 410anti-parallel
Strand 3
A
496 498anti-parallel
Strand 4
A
481 484parallel
Strand 5
A
447 450parallel
Strand 6
A
418 426parallel
Strand 7
A
518 522anti-parallel
Strand 8
A
527 530anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 464first strand
Strand 2
A
487 488parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il