Analysis of interatomic Contacts of Structural Units in PDB entry:
8HS3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HS3 entry

There are 5 chains in PDB entry 8HS3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 3	PHE 354
B	GLU 3	ASN 340
C	ALA 7	GLU 63
R	VAL 32	LEU 311
S	VAL 2	LEU 235

There are 30 helices in PDB entry 8HS3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	32	Right-handed alpha
Helix 2	AA2	A	45	53	Right-handed alpha
Helix 3	AA3	A	207	216	Right-handed 310
Helix 4	AA4	A	226	232	Right-handed 310
Helix 5	AA5	A	241	255	Right-handed alpha
Helix 6	AA6	A	271	278	Right-handed alpha
Helix 7	AA7	A	282	286	Right-handed 310
Helix 8	AA8	A	295	310	Right-handed alpha
Helix 9	AA9	A	330	351	Right-handed alpha
Helix 10	AB1	B	4	25	Right-handed alpha
Helix 11	AB2	B	29	34	Right-handed alpha
Helix 12	AB3	C	9	22	Right-handed alpha
Helix 13	AB4	C	29	44	Right-handed alpha
Helix 14	AB5	R	37	42	Right-handed alpha
Helix 15	AB6	R	56	80	Right-handed alpha
Helix 16	AB7	R	86	113	Right-handed alpha
Helix 17	AB8	R	128	133	Right-handed alpha
Helix 18	AB9	R	137	153	Right-handed alpha
Helix 19	AC1	R	163	185	Right-handed alpha
Helix 20	AC2	R	198	206	Right-handed alpha
Helix 21	AC3	R	206	224	Right-handed alpha
Helix 22	AC4	R	229	231	Right-handed 310
Helix 23	AC5	R	232	254	Right-handed alpha
Helix 24	AC6	R	254	267	Right-handed alpha
Helix 25	AC7	R	271	288	Right-handed alpha
Helix 26	AC8	R	288	299	Right-handed alpha
Helix 27	AC9	R	301	308	Right-handed alpha
Helix 28	AD1	S	28	32	Right-handed 310
Helix 29	AD2	S	87	91	Right-handed 310
Helix 30	AD3	S	208	212	Right-handed 310

There are 15 sheets in PDB entry 8HS3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	190	first strand
Strand 2	A	195	200	anti-parallel
Strand 3	A	34	40	parallel
Strand 4	A	220	224	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	268	first strand
Strand 2	A	322	323	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	51	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	111	113	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	151	first strand
Strand 2	B	157	161	anti-parallel
Strand 3	B	165	169	anti-parallel
Strand 4	B	176	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	249	254	anti-parallel
Strand 4	B	260	265	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	277	first strand
Strand 2	B	284	288	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	3	7	first strand
Strand 2	S	17	25	anti-parallel
Strand 3	S	78	84	anti-parallel
Strand 4	S	68	73	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	10	12	first strand
Strand 2	S	115	119	parallel
Strand 3	S	92	94	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	58	60	first strand
Strand 2	S	45	51	anti-parallel
Strand 3	S	33	39	anti-parallel
Strand 4	S	98	99	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	128	129	first strand
Strand 2	S	143	149	anti-parallel
Strand 3	S	199	204	anti-parallel
Strand 4	S	191	196	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	134	136	first strand
Strand 2	S	232	234	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	182	183	first strand
Strand 2	S	174	178	anti-parallel
Strand 3	S	162	167	anti-parallel
Strand 4	S	214	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HS3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HS3