Analysis of interatomic Contacts of Structural Units in PDB entry:
8HS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HS5 entry

There are 2 chains in PDB entry 8HS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 54GLY 299
B
 SER 54GLU 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 8HS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
70 83Right-handed alpha
Helix 2
AA2
A
93 107Right-handed alpha
Helix 3
AA3
A
120 136Right-handed alpha
Helix 4
AA4
A
156 168Right-handed alpha
Helix 5
AA5
A
168 185Right-handed alpha
Helix 6
AA6
A
195 199Right-handed 310
Helix 7
AA7
A
205 227Right-handed alpha
Helix 8
AA8
A
269 282Right-handed alpha
Helix 9
AA9
A
283 286Right-handed 310
Helix 10
AB1
B
70 83Right-handed alpha
Helix 11
AB2
B
93 107Right-handed alpha
Helix 12
AB3
B
120 136Right-handed alpha
Helix 13
AB4
B
156 168Right-handed alpha
Helix 14
AB5
B
168 185Right-handed alpha
Helix 15
AB6
B
195 199Right-handed 310
Helix 16
AB7
B
205 227Right-handed alpha
Helix 17
AB8
B
253 261Right-handed alpha
Helix 18
AB9
B
269 282Right-handed alpha
Helix 19
AC1
B
283 286Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 8HS5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 115first strand
Strand 2
A
86 91parallel
Strand 3
A
62 65parallel
Strand 4
A
140 143parallel
Strand 5
A
188 193parallel
Strand 6
A
231 238parallel
Strand 7
A
292 295parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 115first strand
Strand 2
B
86 91parallel
Strand 3
B
62 65parallel
Strand 4
B
140 143parallel
Strand 5
B
188 193parallel
Strand 6
B
231 238parallel
Strand 7
B
292 295parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il