Analysis of interatomic Contacts of Structural Units in PDB entry:
8HSH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HSH entry

There are 5 chains in PDB entry 8HSH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
G	MET 1	GLN 229
H	MET 1	GLN 229
I	MET 1	ARG 1119
J	LYS 2	ALA 1505
K	ALA 2	LEU 92

There are106 helices in PDB entry 8HSH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	G	31	47	Right-handed alpha
Helix 2	AA2	G	74	84	Right-handed alpha
Helix 3	AA3	G	110	114	Right-handed 310
Helix 4	AA4	G	152	157	Right-handed alpha
Helix 5	AA5	G	206	223	Right-handed alpha
Helix 6	AA6	G	224	227	Right-handed 310
Helix 7	AA7	H	31	47	Right-handed alpha
Helix 8	AA8	H	74	84	Right-handed alpha
Helix 9	AA9	H	112	114	Right-handed 310
Helix 10	AB1	H	152	157	Right-handed alpha
Helix 11	AB2	H	206	223	Right-handed alpha
Helix 12	AB3	H	224	226	Right-handed 310
Helix 13	AB4	I	19	30	Right-handed alpha
Helix 14	AB5	I	43	52	Right-handed alpha
Helix 15	AB6	I	79	86	Right-handed alpha
Helix 16	AB7	I	193	200	Right-handed alpha
Helix 17	AB8	I	203	211	Right-handed alpha
Helix 18	AB9	I	215	217	Right-handed 310
Helix 19	AC1	I	218	223	Right-handed alpha
Helix 20	AC2	I	232	242	Right-handed alpha
Helix 21	AC3	I	274	279	Right-handed alpha
Helix 22	AC4	I	302	316	Right-handed alpha
Helix 23	AC5	I	327	329	Right-handed 310
Helix 24	AC6	I	335	362	Right-handed alpha
Helix 25	AC7	I	375	389	Right-handed alpha
Helix 26	AC8	I	399	408	Right-handed alpha
Helix 27	AC9	I	424	429	Right-handed alpha
Helix 28	AD1	I	431	435	Right-handed 310
Helix 29	AD2	I	487	492	Right-handed alpha
Helix 30	AD3	I	525	529	Right-handed 310
Helix 31	AD4	I	535	540	Right-handed 310
Helix 32	AD5	I	543	547	Right-handed 310
Helix 33	AD6	I	554	567	Right-handed alpha
Helix 34	AD7	I	583	591	Right-handed alpha
Helix 35	AD8	I	692	697	Right-handed alpha
Helix 36	AD9	I	732	737	Right-handed 310
Helix 37	AE1	I	874	879	Right-handed alpha
Helix 38	AE2	I	882	898	Right-handed alpha
Helix 39	AE3	I	910	932	Right-handed alpha
Helix 40	AE4	I	937	950	Right-handed alpha
Helix 41	AE5	I	958	969	Right-handed alpha
Helix 42	AE6	I	1034	1043	Right-handed alpha
Helix 43	AE7	I	1046	1054	Right-handed alpha
Helix 44	AE8	I	1059	1073	Right-handed alpha
Helix 45	AE9	I	1082	1095	Right-handed alpha
Helix 46	AF1	J	14	22	Right-handed alpha
Helix 47	AF2	J	46	51	Right-handed alpha
Helix 48	AF3	J	84	89	Right-handed alpha
Helix 49	AF4	J	102	107	Right-handed alpha
Helix 50	AF5	J	110	116	Right-handed alpha
Helix 51	AF6	J	122	129	Right-handed alpha
Helix 52	AF7	J	155	163	Right-handed alpha
Helix 53	AF8	J	423	426	Right-handed 310
Helix 54	AF9	J	456	468	Right-handed alpha
Helix 55	AG1	J	469	483	Right-handed alpha
Helix 56	AG2	J	485	505	Right-handed alpha
Helix 57	AG3	J	508	511	Right-handed 310
Helix 58	AG4	J	521	525	Right-handed 310
Helix 59	AG5	J	538	561	Right-handed alpha
Helix 60	AG6	J	563	583	Right-handed alpha
Helix 61	AG7	J	602	608	Right-handed alpha
Helix 62	AG8	J	612	618	Right-handed alpha
Helix 63	AG9	J	646	653	Right-handed alpha
Helix 64	AH1	J	653	664	Right-handed alpha
Helix 65	AH2	J	669	678	Right-handed alpha
Helix 66	AH3	J	679	683	Right-handed 310
Helix 67	AH4	J	684	695	Right-handed alpha
Helix 68	AH5	J	709	711	Right-handed 310
Helix 69	AH6	J	729	734	Right-handed 310
Helix 70	AH7	J	752	763	Right-handed alpha
Helix 71	AH8	J	782	793	Right-handed alpha
Helix 72	AH9	J	810	822	Right-handed alpha
Helix 73	AI1	J	835	841	Right-handed alpha
Helix 74	AI2	J	845	855	Right-handed alpha
Helix 75	AI3	J	876	890	Right-handed alpha
Helix 76	AI4	J	893	899	Right-handed alpha
Helix 77	AI5	J	907	923	Right-handed alpha
Helix 78	AI6	J	924	946	Right-handed alpha
Helix 79	AI7	J	959	980	Right-handed alpha
Helix 80	AI8	J	984	1015	Right-handed alpha
Helix 81	AI9	J	1018	1026	Right-handed alpha
Helix 82	AJ1	J	1031	1040	Right-handed alpha
Helix 83	AJ2	J	1066	1102	Right-handed alpha
Helix 84	AJ3	J	1136	1145	Right-handed alpha
Helix 85	AJ4	J	1167	1181	Right-handed alpha
Helix 86	AJ5	J	1190	1194	Right-handed 310
Helix 87	AJ6	J	1201	1206	Right-handed alpha
Helix 88	AJ7	J	1220	1231	Right-handed alpha
Helix 89	AJ8	J	1232	1236	Right-handed 310
Helix 90	AJ9	J	1256	1264	Right-handed alpha
Helix 91	AK1	J	1331	1339	Right-handed alpha
Helix 92	AK2	J	1340	1359	Right-handed alpha
Helix 93	AK3	J	1364	1376	Right-handed alpha
Helix 94	AK4	J	1395	1407	Right-handed alpha
Helix 95	AK5	J	1423	1430	Right-handed alpha
Helix 96	AK6	J	1433	1441	Right-handed alpha
Helix 97	AK7	J	1442	1453	Right-handed alpha
Helix 98	AK8	J	1461	1469	Right-handed alpha
Helix 99	AK9	J	1474	1477	Right-handed 310
Helix 100	AL1	J	1478	1483	Right-handed alpha
Helix 101	AL2	J	1489	1503	Right-handed alpha
Helix 102	AL3	K	5	12	Right-handed alpha
Helix 103	AL4	K	15	33	Right-handed alpha
Helix 104	AL5	K	52	56	Right-handed 310
Helix 105	AL6	K	59	70	Right-handed alpha
Helix 106	AL7	K	81	90	Right-handed alpha

There are 40 sheets in PDB entry 8HSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	16	first strand
Strand 2	G	20	28	anti-parallel
Strand 3	G	192	201	anti-parallel
Strand 4	G	174	184	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	103	first strand
Strand 2	G	138	147	anti-parallel
Strand 3	G	50	58	anti-parallel
Strand 4	G	165	166	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	89	first strand
Strand 2	G	120	122	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	150	151	first strand
Strand 2	G	169	170	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	16	first strand
Strand 2	H	20	29	anti-parallel
Strand 3	H	192	201	anti-parallel
Strand 4	H	174	184	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	96	103	first strand
Strand 2	H	138	148	anti-parallel
Strand 3	H	49	58	anti-parallel
Strand 4	H	165	166	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	87	89	first strand
Strand 2	H	120	122	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	108	110	first strand
Strand 2	H	128	131	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	150	151	first strand
Strand 2	H	169	170	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	5	first strand
Strand 2	I	899	902	parallel
Strand 3	I	579	580	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	72	first strand
Strand 2	I	91	101	anti-parallel
Strand 3	I	107	110	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	65	72	first strand
Strand 2	I	91	101	anti-parallel
Strand 3	I	114	119	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	127	128	first strand
Strand 2	I	133	136	anti-parallel
Strand 3	I	392	394	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	331	334	first strand
Strand 2	I	138	142	anti-parallel
Strand 3	I	409	411	parallel
Strand 4	I	452	454	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	145	150	first strand
Strand 2	I	158	163	anti-parallel
Strand 3	I	172	177	anti-parallel
Strand 4	I	181	185	anti-parallel
Strand 5	I	190	192	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	460	461	first strand
Strand 2	I	467	475	anti-parallel
Strand 3	I	478	486	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	460	461	first strand
Strand 2	I	467	475	anti-parallel
Strand 3	I	531	533	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	513	516	first strand
Strand 2	I	521	524	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	595	596	first strand
Strand 2	I	654	656	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	620	624	first strand
Strand 2	I	610	615	anti-parallel
Strand 3	I	601	606	anti-parallel
Strand 4	I	648	649	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	629	630	first strand
Strand 2	I	636	637	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	971	972	first strand
Strand 2	I	987	996	anti-parallel
Strand 3	I	838	841	anti-parallel
Strand 4	I	847	853	anti-parallel
Strand 5	I	688	691	parallel
Strand 6	I	869	871	anti-parallel
Strand 7	I	670	676	parallel
Strand 8	I	987	996	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	701	713	first strand
Strand 2	I	819	832	anti-parallel
Strand 3	I	799	807	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	721	722	first strand
Strand 2	I	758	760	anti-parallel
Strand 3	I	786	787	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	754	756	first strand
Strand 2	I	790	791	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	1108	1109	first strand
Strand 2	I	1097	1102	anti-parallel
Strand 3	J	7	12	anti-parallel
Strand 4	J	1455	1458	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	91	100	first strand
Strand 2	J	513	519	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	134	first strand
Strand 2	J	152	154	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	167	170	first strand
Strand 2	J	392	396	anti-parallel
Strand 3	J	201	205	anti-parallel
Strand 4	J	183	185	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	399	402	first strand
Strand 2	J	443	446	anti-parallel
Strand 3	J	433	438	anti-parallel
Strand 4	J	414	415	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	420	422	first strand
Strand 2	J	427	428	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	528	529	first strand
Strand 2	J	535	536	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	626	633	first strand
Strand 2	J	726	728	parallel
Strand 3	J	641	645	anti-parallel
Strand 4	J	713	721	parallel
Strand 5	J	700	703	anti-parallel
Strand 6	J	744	748	anti-parallel
Strand 7	J	626	633	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	842	843	first strand
Strand 2	J	864	867	parallel
Strand 3	J	872	875	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1118	1121	first strand
Strand 2	J	1185	1188	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1123	1124	first strand
Strand 2	J	1133	1134	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1153	1154	first strand
Strand 2	J	1159	1160	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1300	1305	first strand
Strand 2	J	1290	1295	anti-parallel
Strand 3	J	1279	1284	anti-parallel
Strand 4	J	1318	1319	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1392	1394	first strand
Strand 2	J	1378	1381	anti-parallel
Strand 3	J	1417	1420	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	1485	1488	first strand
Strand 2	K	73	76	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HSH

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HSH