Analysis of interatomic Contacts of Structural Units in PDB entry:
8HSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HSJ entry

There are 6 chains in PDB entry 8HSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 60	LEU 420
B	ARG 60	LEU 420
C	ARG 60	LEU 420
D	ARG 60	LEU 420
E	ARG 60	LEU 420
F	ARG 60	LEU 420

There are 94 helices in PDB entry 8HSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	91	99	Right-handed alpha
Helix 2	AA2	A	132	137	Right-handed alpha
Helix 3	AA3	A	141	145	Right-handed 310
Helix 4	AA4	A	161	172	Right-handed alpha
Helix 5	AA5	A	190	205	Right-handed alpha
Helix 6	AA6	A	218	229	Right-handed alpha
Helix 7	AA7	A	242	262	Right-handed alpha
Helix 8	AA8	A	273	285	Right-handed alpha
Helix 9	AA9	A	301	310	Right-handed alpha
Helix 10	AB1	A	332	344	Right-handed alpha
Helix 11	AB2	A	353	359	Right-handed alpha
Helix 12	AB3	A	374	379	Right-handed alpha
Helix 13	AB4	A	380	395	Right-handed alpha
Helix 14	AB5	A	398	411	Right-handed alpha
Helix 15	AB6	A	414	420	Right-handed alpha
Helix 16	AB7	B	91	99	Right-handed alpha
Helix 17	AB8	B	132	137	Right-handed alpha
Helix 18	AB9	B	141	145	Right-handed 310
Helix 19	AC1	B	163	172	Right-handed alpha
Helix 20	AC2	B	190	205	Right-handed alpha
Helix 21	AC3	B	218	229	Right-handed alpha
Helix 22	AC4	B	242	262	Right-handed alpha
Helix 23	AC5	B	273	285	Right-handed alpha
Helix 24	AC6	B	301	310	Right-handed alpha
Helix 25	AC7	B	332	344	Right-handed alpha
Helix 26	AC8	B	353	359	Right-handed alpha
Helix 27	AC9	B	374	379	Right-handed alpha
Helix 28	AD1	B	380	395	Right-handed alpha
Helix 29	AD2	B	398	411	Right-handed alpha
Helix 30	AD3	B	414	420	Right-handed alpha
Helix 31	AD4	C	91	99	Right-handed alpha
Helix 32	AD5	C	132	137	Right-handed alpha
Helix 33	AD6	C	141	145	Right-handed 310
Helix 34	AD7	C	161	172	Right-handed alpha
Helix 35	AD8	C	190	205	Right-handed alpha
Helix 36	AD9	C	218	229	Right-handed alpha
Helix 37	AE1	C	242	262	Right-handed alpha
Helix 38	AE2	C	273	285	Right-handed alpha
Helix 39	AE3	C	298	300	Right-handed 310
Helix 40	AE4	C	301	310	Right-handed alpha
Helix 41	AE5	C	332	344	Right-handed alpha
Helix 42	AE6	C	353	359	Right-handed alpha
Helix 43	AE7	C	374	379	Right-handed alpha
Helix 44	AE8	C	380	395	Right-handed alpha
Helix 45	AE9	C	398	410	Right-handed alpha
Helix 46	AF1	C	411	413	Right-handed 310
Helix 47	AF2	C	414	420	Right-handed alpha
Helix 48	AF3	D	91	99	Right-handed alpha
Helix 49	AF4	D	132	137	Right-handed alpha
Helix 50	AF5	D	141	145	Right-handed 310
Helix 51	AF6	D	161	172	Right-handed alpha
Helix 52	AF7	D	190	205	Right-handed alpha
Helix 53	AF8	D	218	229	Right-handed alpha
Helix 54	AF9	D	242	262	Right-handed alpha
Helix 55	AG1	D	273	285	Right-handed alpha
Helix 56	AG2	D	298	300	Right-handed 310
Helix 57	AG3	D	301	310	Right-handed alpha
Helix 58	AG4	D	332	344	Right-handed alpha
Helix 59	AG5	D	353	359	Right-handed alpha
Helix 60	AG6	D	374	379	Right-handed alpha
Helix 61	AG7	D	380	395	Right-handed alpha
Helix 62	AG8	D	398	411	Right-handed alpha
Helix 63	AG9	D	414	420	Right-handed alpha
Helix 64	AH1	E	91	99	Right-handed alpha
Helix 65	AH2	E	132	137	Right-handed alpha
Helix 66	AH3	E	141	145	Right-handed 310
Helix 67	AH4	E	161	172	Right-handed alpha
Helix 68	AH5	E	190	205	Right-handed alpha
Helix 69	AH6	E	218	229	Right-handed alpha
Helix 70	AH7	E	242	262	Right-handed alpha
Helix 71	AH8	E	273	285	Right-handed alpha
Helix 72	AH9	E	301	310	Right-handed alpha
Helix 73	AI1	E	332	344	Right-handed alpha
Helix 74	AI2	E	353	359	Right-handed alpha
Helix 75	AI3	E	380	395	Right-handed alpha
Helix 76	AI4	E	398	411	Right-handed alpha
Helix 77	AI5	E	414	420	Right-handed alpha
Helix 78	AI6	F	91	99	Right-handed alpha
Helix 79	AI7	F	132	137	Right-handed alpha
Helix 80	AI8	F	141	145	Right-handed 310
Helix 81	AI9	F	161	172	Right-handed alpha
Helix 82	AJ1	F	190	205	Right-handed alpha
Helix 83	AJ2	F	218	229	Right-handed alpha
Helix 84	AJ3	F	242	263	Right-handed alpha
Helix 85	AJ4	F	273	285	Right-handed alpha
Helix 86	AJ5	F	298	300	Right-handed 310
Helix 87	AJ6	F	301	310	Right-handed alpha
Helix 88	AJ7	F	332	344	Right-handed alpha
Helix 89	AJ8	F	353	359	Right-handed alpha
Helix 90	AJ9	F	374	379	Right-handed alpha
Helix 91	AK1	F	380	394	Right-handed alpha
Helix 92	AK2	F	395	397	Right-handed 310
Helix 93	AK3	F	398	411	Right-handed alpha
Helix 94	AK4	F	414	420	Right-handed alpha

There are 23 sheets in PDB entry 8HSJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	65	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	121	124	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	74	76	anti-parallel
Strand 3	A	88	90	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	312	314	anti-parallel
Strand 3	A	319	327	anti-parallel
Strand 4	A	266	272	parallel
Strand 5	A	209	217	parallel
Strand 6	A	233	238	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	148	first strand
Strand 2	A	312	314	anti-parallel
Strand 3	A	319	327	anti-parallel
Strand 4	A	180	184	parallel
Strand 5	A	348	351	parallel
Strand 6	A	371	372	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	64	first strand
Strand 2	B	106	108	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	68	first strand
Strand 2	B	74	76	anti-parallel
Strand 3	B	88	90	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	312	314	anti-parallel
Strand 3	B	319	326	anti-parallel
Strand 4	B	266	272	parallel
Strand 5	B	209	217	parallel
Strand 6	B	233	238	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	312	314	anti-parallel
Strand 3	B	319	326	anti-parallel
Strand 4	B	180	183	parallel
Strand 5	B	348	351	parallel
Strand 6	B	371	372	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	62	64	first strand
Strand 2	C	106	111	anti-parallel
Strand 3	C	121	124	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	74	76	anti-parallel
Strand 3	C	88	90	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	312	314	anti-parallel
Strand 3	C	319	327	anti-parallel
Strand 4	C	266	272	parallel
Strand 5	C	209	217	parallel
Strand 6	C	233	238	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	312	314	anti-parallel
Strand 3	C	319	327	anti-parallel
Strand 4	C	180	184	parallel
Strand 5	C	348	351	parallel
Strand 6	C	371	372	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	62	65	first strand
Strand 2	D	105	108	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	68	first strand
Strand 2	D	74	76	anti-parallel
Strand 3	D	88	90	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	312	314	anti-parallel
Strand 3	D	319	327	anti-parallel
Strand 4	D	266	272	parallel
Strand 5	D	209	217	parallel
Strand 6	D	233	238	parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	147	148	first strand
Strand 2	D	312	314	anti-parallel
Strand 3	D	319	327	anti-parallel
Strand 4	D	180	184	parallel
Strand 5	D	348	351	parallel
Strand 6	D	371	372	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	62	64	first strand
Strand 2	E	106	108	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	68	first strand
Strand 2	E	74	75	anti-parallel
Strand 3	E	89	90	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	312	314	anti-parallel
Strand 3	E	319	326	anti-parallel
Strand 4	E	266	272	parallel
Strand 5	E	209	217	parallel
Strand 6	E	233	238	parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	147	148	first strand
Strand 2	E	312	314	anti-parallel
Strand 3	E	319	326	anti-parallel
Strand 4	E	180	183	parallel
Strand 5	E	348	351	parallel
Strand 6	E	371	372	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	90	first strand
Strand 2	F	74	76	anti-parallel
Strand 3	F	63	68	anti-parallel
Strand 4	F	105	107	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	312	314	anti-parallel
Strand 3	F	319	327	anti-parallel
Strand 4	F	266	272	parallel
Strand 5	F	209	217	parallel
Strand 6	F	233	238	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	147	148	first strand
Strand 2	F	312	314	anti-parallel
Strand 3	F	319	327	anti-parallel
Strand 4	F	180	184	parallel
Strand 5	F	348	351	parallel
Strand 6	F	371	372	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HSJ