Analysis of interatomic Contacts of Structural Units in PDB entry:
8HSM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HSM entry

There are 3 chains in PDB entry 8HSM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1GLU 280
B
 GLU 1ASN 98
C
 PHE 1VAL 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 8HSM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
55 61Right-handed alpha
Helix 3
AA3
A
63 91Right-handed alpha
Helix 4
AA4
A
142 156Right-handed alpha
Helix 5
AA5
A
157 167Right-handed alpha
Helix 6
AA6
A
167 180Right-handed alpha
Helix 7
AA7
A
180 185Right-handed alpha
Helix 8
AA8
A
230 233Right-handed 310
Helix 9
AA9
A
258 260Right-handed 310
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There are 7 sheets in PDB entry 8HSM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 47first strand
Strand 2
A
31 37anti-parallel
Strand 3
A
21 28anti-parallel
Strand 4
A
4 12anti-parallel
Strand 5
A
99 108anti-parallel
Strand 6
A
114 123anti-parallel
Strand 7
A
126 131anti-parallel
Strand 8
A
138 140anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 198first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
246 254anti-parallel
Strand 4
A
234 235anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 198first strand
Strand 2
A
204 213anti-parallel
Strand 3
A
246 254anti-parallel
Strand 4
A
239 240anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
219 224anti-parallel
Strand 3
A
262 267anti-parallel
Strand 4
A
275 277anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
49 50anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 11first strand
Strand 2
B
21 30anti-parallel
Strand 3
B
61 69anti-parallel
Strand 4
B
54 55anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
90 93anti-parallel
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