Analysis of interatomic Contacts of Structural Units in PDB entry:
8HSV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HSV entry

There are 4 chains in PDB entry 8HSV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLN 394
E
 LEU 211GLN 225
B
 LYS 4GLN 394
F
 ASP 212GLN 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8HSV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 109Right-handed alpha
Helix 2
AA2
A
278 282Right-handed 310
Helix 3
AA3
B
98 107Right-handed alpha
Helix 4
AA4
B
279 284Right-handed 310
Helix 5
AA5
B
312 315Right-handed 310
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There are 9 sheets in PDB entry 8HSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
37 42anti-parallel
Strand 3
A
19 22anti-parallel
Strand 4
A
6 12anti-parallel
Strand 5
A
386 390parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
26 30anti-parallel
Strand 3
A
164 172parallel
Strand 4
A
140 151anti-parallel
Strand 5
A
127 129anti-parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 34first strand
Strand 2
A
26 30anti-parallel
Strand 3
A
164 172parallel
Strand 4
A
140 151anti-parallel
Strand 5
A
52 63anti-parallel
Strand 6
A
75 85anti-parallel
Strand 7
B
183 189parallel
Strand 8
B
196 203anti-parallel
Strand 9
B
214 222anti-parallel
Strand 10
B
266 274anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 188first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
214 222anti-parallel
Strand 4
A
266 274anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 258first strand
Strand 2
A
231 241anti-parallel
Strand 3
A
317 328anti-parallel
Strand 4
A
342 349anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 117first strand
Strand 2
B
37 43anti-parallel
Strand 3
B
18 22anti-parallel
Strand 4
B
6 12anti-parallel
Strand 5
B
386 390parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
26 30anti-parallel
Strand 3
B
163 173parallel
Strand 4
B
140 151anti-parallel
Strand 5
B
52 63anti-parallel
Strand 6
B
75 85anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 34first strand
Strand 2
B
26 30anti-parallel
Strand 3
B
163 173parallel
Strand 4
B
140 151anti-parallel
Strand 5
B
127 129anti-parallel
Strand 6
B
288 289anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
207 209first strand
Strand 2
B
342 352parallel
Strand 3
B
317 330anti-parallel
Strand 4
B
227 241anti-parallel
Strand 5
B
247 258anti-parallel
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