Analysis of interatomic Contacts of Structural Units in PDB entry:
8HTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HTC entry

There are 2 chains in PDB entry 8HTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 44VAL 276
B
 LEU -2GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8HTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
69 77Right-handed alpha
Helix 3
AA3
A
77 87Right-handed alpha
Helix 4
AA4
A
158 167Right-handed alpha
Helix 5
AA5
A
168 174Right-handed 310
Helix 6
AA6
A
180 188Right-handed alpha
Helix 7
AA7
A
190 194Right-handed 310
Helix 8
AA8
A
198 213Right-handed alpha
Helix 9
AA9
A
226 228Right-handed 310
Helix 10
AB1
A
239 255Right-handed alpha
Helix 11
AB2
B
22 35Right-handed alpha
Helix 12
AB3
B
37 39Right-handed 310
Helix 13
AB4
B
56 60Right-handed 310
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There are 2 sheets in PDB entry 8HTC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 131first strand
Strand 2
A
220 224anti-parallel
Strand 3
A
96 101anti-parallel
Strand 4
A
62 67anti-parallel
Strand 5
A
117 121anti-parallel
Strand 6
A
230 234anti-parallel
Strand 7
A
262 266parallel
Strand 8
A
269 273anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 17first strand
Strand 2
B
1 6anti-parallel
Strand 3
B
66 71parallel
Strand 4
B
41 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il