Analysis of interatomic Contacts of Structural Units in PDB entry:
8HTI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HTI entry

There are 5 chains in PDB entry 8HTI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 13	LEU 380
B	GLN 9	ASN 340
G	ALA 10	PHE 61
N	VAL 2	VAL 126
R	SER 8	PHE 310

There are 24 helices in PDB entry 8HTI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	39	Right-handed alpha
Helix 2	AA2	A	220	225	Right-handed 310
Helix 3	AA3	A	252	264	Right-handed alpha
Helix 4	AA4	A	325	336	Right-handed alpha
Helix 5	AA5	A	356	377	Right-handed alpha
Helix 6	AA6	B	10	26	Right-handed alpha
Helix 7	AA7	B	29	34	Right-handed alpha
Helix 8	AA8	G	11	23	Right-handed alpha
Helix 9	AA9	G	30	44	Right-handed alpha
Helix 10	AB1	N	87	91	Right-handed 310
Helix 11	AB2	R	22	26	Right-handed 310
Helix 12	AB3	R	29	54	Right-handed alpha
Helix 13	AB4	R	59	78	Right-handed alpha
Helix 14	AB5	R	79	90	Right-handed alpha
Helix 15	AB6	R	96	130	Right-handed alpha
Helix 16	AB7	R	133	138	Right-handed alpha
Helix 17	AB8	R	139	159	Right-handed alpha
Helix 18	AB9	R	159	166	Right-handed alpha
Helix 19	AC1	R	182	188	Right-handed alpha
Helix 20	AC2	R	194	228	Right-handed alpha
Helix 21	AC3	R	234	267	Right-handed alpha
Helix 22	AC4	R	271	280	Right-handed alpha
Helix 23	AC5	R	284	295	Right-handed alpha
Helix 24	AC6	R	298	310	Right-handed alpha

There are 11 sheets in PDB entry 8HTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	199	first strand
Strand 2	A	204	209	anti-parallel
Strand 3	A	40	46	parallel
Strand 4	A	229	233	parallel
Strand 5	A	272	277	parallel
Strand 6	A	345	349	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	62	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	165	170	anti-parallel
Strand 4	B	175	181	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	218	222	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	3	7	first strand
Strand 2	N	17	25	anti-parallel
Strand 3	N	78	84	anti-parallel
Strand 4	N	68	73	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	58	60	first strand
Strand 2	N	45	51	anti-parallel
Strand 3	N	34	39	anti-parallel
Strand 4	N	92	98	anti-parallel
Strand 5	N	122	124	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	93	95	first strand
Strand 2	R	13	16	anti-parallel
Strand 3	R	175	176	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HTI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HTI