Analysis of interatomic Contacts of Structural Units in PDB entry:
8HTU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HTU entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 27 chains in PDB entry 8HTU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
U	SER 47	ASN 265
V	ASP 46	ASN 260
W	ARG 38	ARG 39
W	VAL 41	ASN 265
1	ALA 49	PRO 241
2	ASN 63	LYS 273
3	LYS 102	HIS 323
4	ASP 64	GLY 269
A	GLU 9	GLY 750
B	ALA 2	GLY 734
C	ALA 2	TYR 81
D	PHE 69	LEU 210
E	VAL 68	SER 131
F	ASP 86	ARG 246
G	ALA 59	PHE 155
H	LYS 45	LYS 139
I	MET 1	GLU 34
J	MET 1	LEU 41
K	TYR 50	ALA 130
L	GLU 61	LYS 223
M	THR 2	GLN 32
O	PHE 54	ASN 143
5	GLU 50	PRO 241
6	ASN 63	LEU 267
7	ARG 103	LYS 321
8	ASP 64	LEU 267
9	MET 87	LEU 311

There are216 helices in PDB entry 8HTU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	U	58	62	Right-handed 310
Helix 2	AA2	U	87	122	Right-handed alpha
Helix 3	AA3	U	129	133	Right-handed 310
Helix 4	AA4	U	134	139	Right-handed 310
Helix 5	AA5	U	156	178	Right-handed alpha
Helix 6	AA6	U	191	195	Right-handed 310
Helix 7	AA7	U	202	234	Right-handed alpha
Helix 8	AA8	U	237	248	Right-handed alpha
Helix 9	AA9	U	253	261	Right-handed 310
Helix 10	AB1	V	58	62	Right-handed 310
Helix 11	AB2	V	87	122	Right-handed alpha
Helix 12	AB3	V	144	148	Right-handed 310
Helix 13	AB4	V	156	177	Right-handed alpha
Helix 14	AB5	V	191	195	Right-handed 310
Helix 15	AB6	V	202	234	Right-handed alpha
Helix 16	AB7	V	237	248	Right-handed alpha
Helix 17	AB8	V	253	258	Right-handed 310
Helix 18	AB9	W	58	62	Right-handed 310
Helix 19	AC1	W	87	122	Right-handed alpha
Helix 20	AC2	W	129	133	Right-handed 310
Helix 21	AC3	W	135	139	Right-handed 310
Helix 22	AC4	W	156	177	Right-handed alpha
Helix 23	AC5	W	191	195	Right-handed 310
Helix 24	AC6	W	202	235	Right-handed alpha
Helix 25	AC7	W	237	248	Right-handed alpha
Helix 26	AC8	W	253	258	Right-handed 310
Helix 27	AC9	1	79	110	Right-handed alpha
Helix 28	AD1	1	115	118	Right-handed 310
Helix 29	AD2	1	119	124	Right-handed alpha
Helix 30	AD3	1	140	161	Right-handed alpha
Helix 31	AD4	1	164	170	Right-handed alpha
Helix 32	AD5	1	172	176	Right-handed 310
Helix 33	AD6	1	185	214	Right-handed alpha
Helix 34	AD7	1	218	229	Right-handed alpha
Helix 35	AD8	1	235	240	Right-handed alpha
Helix 36	AD9	2	96	120	Right-handed alpha
Helix 37	AE1	2	121	130	Right-handed alpha
Helix 38	AE2	2	149	174	Right-handed alpha
Helix 39	AE3	2	212	220	Right-handed alpha
Helix 40	AE4	2	222	245	Right-handed alpha
Helix 41	AE5	2	247	258	Right-handed alpha
Helix 42	AE6	3	111	116	Right-handed alpha
Helix 43	AE7	3	133	137	Right-handed 310
Helix 44	AE8	3	145	162	Right-handed alpha
Helix 45	AE9	3	165	173	Right-handed alpha
Helix 46	AF1	3	177	181	Right-handed 310
Helix 47	AF2	3	183	187	Right-handed 310
Helix 48	AF3	3	201	226	Right-handed alpha
Helix 49	AF4	3	228	232	Right-handed 310
Helix 50	AF5	3	264	297	Right-handed alpha
Helix 51	AF6	3	299	310	Right-handed alpha
Helix 52	AF7	3	315	320	Right-handed alpha
Helix 53	AF8	4	99	131	Right-handed alpha
Helix 54	AF9	4	149	174	Right-handed alpha
Helix 55	AG1	4	216	244	Right-handed alpha
Helix 56	AG2	4	246	257	Right-handed alpha
Helix 57	AG3	4	263	268	Right-handed alpha
Helix 58	AG4	A	23	28	Right-handed alpha
Helix 59	AG5	A	43	52	Right-handed alpha
Helix 60	AG6	A	55	60	Right-handed alpha
Helix 61	AG7	A	62	94	Right-handed alpha
Helix 62	AG8	A	97	104	Right-handed alpha
Helix 63	AG9	A	120	125	Right-handed 310
Helix 64	AH1	A	140	149	Right-handed alpha
Helix 65	AH2	A	152	180	Right-handed alpha
Helix 66	AH3	A	184	189	Right-handed alpha
Helix 67	AH4	A	190	201	Right-handed alpha
Helix 68	AH5	A	202	217	Right-handed alpha
Helix 69	AH6	A	217	227	Right-handed alpha
Helix 70	AH7	A	230	234	Right-handed 310
Helix 71	AH8	A	236	243	Right-handed alpha
Helix 72	AH9	A	243	249	Right-handed alpha
Helix 73	AI1	A	251	256	Right-handed 310
Helix 74	AI2	A	258	264	Right-handed alpha
Helix 75	AI3	A	265	270	Right-handed 310
Helix 76	AI4	A	287	306	Right-handed alpha
Helix 77	AI5	A	318	325	Right-handed alpha
Helix 78	AI6	A	337	345	Right-handed alpha
Helix 79	AI7	A	345	371	Right-handed alpha
Helix 80	AI8	A	380	413	Right-handed alpha
Helix 81	AI9	A	415	419	Right-handed 310
Helix 82	AJ1	A	422	430	Right-handed alpha
Helix 83	AJ2	A	430	462	Right-handed alpha
Helix 84	AJ3	A	464	468	Right-handed 310
Helix 85	AJ4	A	478	490	Right-handed alpha
Helix 86	AJ5	A	490	495	Right-handed alpha
Helix 87	AJ6	A	527	554	Right-handed alpha
Helix 88	AJ7	A	563	568	Right-handed alpha
Helix 89	AJ8	A	585	616	Right-handed alpha
Helix 90	AJ9	A	633	638	Right-handed alpha
Helix 91	AK1	A	640	648	Right-handed alpha
Helix 92	AK2	A	653	658	Right-handed alpha
Helix 93	AK3	A	664	687	Right-handed alpha
Helix 94	AK4	A	689	706	Right-handed alpha
Helix 95	AK5	A	718	749	Right-handed alpha
Helix 96	AK6	B	9	14	Right-handed alpha
Helix 97	AK7	B	18	27	Right-handed alpha
Helix 98	AK8	B	30	34	Right-handed 310
Helix 99	AK9	B	38	72	Right-handed alpha
Helix 100	AL1	B	73	80	Right-handed alpha
Helix 101	AL2	B	81	84	Right-handed 310
Helix 102	AL3	B	97	104	Right-handed alpha
Helix 103	AL4	B	119	127	Right-handed alpha
Helix 104	AL5	B	131	156	Right-handed alpha
Helix 105	AL6	B	164	169	Right-handed alpha
Helix 106	AL7	B	170	181	Right-handed alpha
Helix 107	AL8	B	183	197	Right-handed alpha
Helix 108	AL9	B	197	203	Right-handed alpha
Helix 109	AM1	B	208	212	Right-handed 310
Helix 110	AM2	B	222	228	Right-handed alpha
Helix 111	AM3	B	229	235	Right-handed 310
Helix 112	AM4	B	269	288	Right-handed alpha
Helix 113	AM5	B	300	308	Right-handed alpha
Helix 114	AM6	B	321	329	Right-handed alpha
Helix 115	AM7	B	329	353	Right-handed alpha
Helix 116	AM8	B	364	397	Right-handed alpha
Helix 117	AM9	B	406	414	Right-handed alpha
Helix 118	AN1	B	414	446	Right-handed alpha
Helix 119	AN2	B	448	452	Right-handed 310
Helix 120	AN3	B	457	467	Right-handed alpha
Helix 121	AN4	B	483	490	Right-handed alpha
Helix 122	AN5	B	493	502	Right-handed alpha
Helix 123	AN6	B	513	540	Right-handed alpha
Helix 124	AN7	B	549	554	Right-handed 310
Helix 125	AN8	B	562	566	Right-handed 310
Helix 126	AN9	B	571	603	Right-handed alpha
Helix 127	AO1	B	606	613	Right-handed alpha
Helix 128	AO2	B	615	623	Right-handed alpha
Helix 129	AO3	B	623	628	Right-handed alpha
Helix 130	AO4	B	628	633	Right-handed alpha
Helix 131	AO5	B	643	666	Right-handed alpha
Helix 132	AO6	B	668	685	Right-handed alpha
Helix 133	AO7	B	701	732	Right-handed alpha
Helix 134	AO8	C	15	21	Right-handed alpha
Helix 135	AO9	C	44	48	Right-handed 310
Helix 136	AP1	C	52	57	Right-handed alpha
Helix 137	AP2	C	73	78	Right-handed alpha
Helix 138	AP3	D	91	97	Right-handed alpha
Helix 139	AP4	D	133	148	Right-handed alpha
Helix 140	AP5	D	190	194	Right-handed 310
Helix 141	AP6	D	206	210	Right-handed 310
Helix 142	AP7	E	124	126	Right-handed 310
Helix 143	AP8	F	96	115	Right-handed alpha
Helix 144	AP9	F	121	144	Right-handed alpha
Helix 145	AQ1	F	161	165	Right-handed 310
Helix 146	AQ2	F	168	195	Right-handed alpha
Helix 147	AQ3	F	198	205	Right-handed alpha
Helix 148	AQ4	F	207	216	Right-handed alpha
Helix 149	AQ5	F	217	219	Right-handed 310
Helix 150	AQ6	F	220	232	Right-handed alpha
Helix 151	AQ7	F	237	241	Right-handed 310
Helix 152	AQ8	G	60	78	Right-handed alpha
Helix 153	AQ9	G	80	92	Right-handed alpha
Helix 154	AR1	G	106	110	Right-handed 310
Helix 155	AR2	G	112	117	Right-handed alpha
Helix 156	AR3	G	125	148	Right-handed alpha
Helix 157	AR4	H	57	63	Right-handed alpha
Helix 158	AR5	H	79	86	Right-handed alpha
Helix 159	AR6	H	96	116	Right-handed alpha
Helix 160	AR7	H	121	126	Right-handed alpha
Helix 161	AR8	H	134	138	Right-handed 310
Helix 162	AR9	I	4	31	Right-handed alpha
Helix 163	AS1	J	2	9	Right-handed alpha
Helix 164	AS2	J	10	33	Right-handed alpha
Helix 165	AS3	K	53	72	Right-handed alpha
Helix 166	AS4	K	104	130	Right-handed alpha
Helix 167	AS5	L	70	72	Right-handed 310
Helix 168	AS6	L	80	85	Right-handed alpha
Helix 169	AS7	L	85	94	Right-handed alpha
Helix 170	AS8	L	95	99	Right-handed 310
Helix 171	AS9	L	103	127	Right-handed alpha
Helix 172	AT1	L	134	162	Right-handed alpha
Helix 173	AT2	L	183	186	Right-handed 310
Helix 174	AT3	L	187	214	Right-handed alpha
Helix 175	AT4	M	5	32	Right-handed alpha
Helix 176	AT5	O	63	78	Right-handed alpha
Helix 177	AT6	O	88	100	Right-handed alpha
Helix 178	AT7	O	112	139	Right-handed alpha
Helix 179	AT8	5	79	101	Right-handed alpha
Helix 180	AT9	5	101	110	Right-handed alpha
Helix 181	AU1	5	151	160	Right-handed alpha
Helix 182	AU2	5	164	170	Right-handed alpha
Helix 183	AU3	5	172	176	Right-handed 310
Helix 184	AU4	5	185	213	Right-handed alpha
Helix 185	AU5	5	220	229	Right-handed alpha
Helix 186	AU6	5	235	240	Right-handed alpha
Helix 187	AU7	6	96	127	Right-handed alpha
Helix 188	AU8	6	149	174	Right-handed alpha
Helix 189	AU9	6	214	245	Right-handed alpha
Helix 190	AV1	6	247	258	Right-handed alpha
Helix 191	AV2	7	111	115	Right-handed 310
Helix 192	AV3	7	144	162	Right-handed alpha
Helix 193	AV4	7	165	174	Right-handed alpha
Helix 194	AV5	7	183	187	Right-handed 310
Helix 195	AV6	7	190	194	Right-handed 310
Helix 196	AV7	7	201	226	Right-handed alpha
Helix 197	AV8	7	228	232	Right-handed 310
Helix 198	AV9	7	264	295	Right-handed alpha
Helix 199	AW1	7	299	310	Right-handed alpha
Helix 200	AW2	8	98	119	Right-handed alpha
Helix 201	AW3	8	122	130	Right-handed alpha
Helix 202	AW4	8	149	174	Right-handed alpha
Helix 203	AW5	8	198	203	Right-handed alpha
Helix 204	AW6	8	211	244	Right-handed alpha
Helix 205	AW7	8	246	255	Right-handed alpha
Helix 206	AW8	8	257	261	Right-handed 310
Helix 207	AW9	8	263	267	Right-handed 310
Helix 208	AX1	9	120	124	Right-handed 310
Helix 209	AX2	9	147	150	Right-handed 310
Helix 210	AX3	9	151	178	Right-handed alpha
Helix 211	AX4	9	179	181	Right-handed 310
Helix 212	AX5	9	193	196	Right-handed 310
Helix 213	AX6	9	197	203	Right-handed alpha
Helix 214	AX7	9	224	241	Right-handed alpha
Helix 215	AX8	9	265	297	Right-handed alpha
Helix 216	AX9	9	300	311	Right-handed alpha

There are 14 sheets in PDB entry 8HTU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	1	130	131	first strand
Strand 2	1	134	135	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	181	183	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	113	first strand
Strand 2	A	133	136	anti-parallel
Strand 3	A	126	127	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	620	first strand
Strand 2	A	626	628	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	90	first strand
Strand 2	B	113	115	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	636	first strand
Strand 2	B	639	640	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	65	67	first strand
Strand 2	C	5	8	anti-parallel
Strand 3	D	186	187	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	131	first strand
Strand 2	D	99	105	anti-parallel
Strand 3	D	152	157	anti-parallel
Strand 4	D	163	165	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	110	113	first strand
Strand 2	D	119	122	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	123	first strand
Strand 2	E	106	109	anti-parallel
Strand 3	E	90	96	anti-parallel
Strand 4	E	76	79	anti-parallel
Strand 5	E	128	130	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	91	92	first strand
Strand 2	F	147	148	anti-parallel
Strand 3	F	154	155	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	80	82	first strand
Strand 2	K	88	90	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	67	68	first strand
Strand 2	L	78	79	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HTU

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HTU