Analysis of interatomic Contacts of Structural Units in PDB entry:
8HUB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HUB entry

There are 2 chains in PDB entry 8HUB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 218	GLU 861
B	GLU 218	SER 547

There are 98 helices in PDB entry 8HUB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	233	259	Right-handed alpha
Helix 2	AA2	A	263	273	Right-handed alpha
Helix 3	AA3	A	356	368	Right-handed alpha
Helix 4	AA4	A	368	404	Right-handed alpha
Helix 5	AA5	A	422	425	Right-handed 310
Helix 6	AA6	A	426	431	Right-handed alpha
Helix 7	AA7	A	519	532	Right-handed alpha
Helix 8	AA8	A	655	665	Right-handed alpha
Helix 9	AA9	A	695	704	Right-handed alpha
Helix 10	AB1	A	712	715	Right-handed 310
Helix 11	AB2	A	716	726	Right-handed alpha
Helix 12	AB3	A	733	740	Right-handed alpha
Helix 13	AB4	A	748	756	Right-handed alpha
Helix 14	AB5	A	774	787	Right-handed alpha
Helix 15	AB6	A	790	804	Right-handed alpha
Helix 16	AB7	A	808	816	Right-handed alpha
Helix 17	AB8	A	824	828	Right-handed 310
Helix 18	AB9	A	829	834	Right-handed alpha
Helix 19	AC1	A	836	860	Right-handed alpha
Helix 20	AC2	B	233	258	Right-handed alpha
Helix 21	AC3	B	263	274	Right-handed alpha
Helix 22	AC4	B	311	315	Right-handed 310
Helix 23	AC5	B	351	366	Right-handed alpha
Helix 24	AC6	B	368	393	Right-handed alpha
Helix 25	AC7	B	393	403	Right-handed alpha
Helix 26	AC8	B	420	425	Right-handed alpha
Helix 27	AC9	B	498	508	Right-handed alpha
Helix 28	AD1	B	512	533	Right-handed alpha
Helix 29	AD2	B	549	562	Right-handed alpha
Helix 30	AD3	B	577	584	Right-handed alpha
Helix 31	AD4	B	589	607	Right-handed alpha
Helix 32	AD5	B	608	610	Right-handed 310
Helix 33	AD6	B	611	618	Right-handed alpha
Helix 34	AD7	B	655	678	Right-handed alpha
Helix 35	AD8	B	694	704	Right-handed alpha
Helix 36	AD9	B	711	715	Right-handed 310
Helix 37	AE1	B	716	726	Right-handed alpha
Helix 38	AE2	B	733	741	Right-handed alpha
Helix 39	AE3	B	743	747	Right-handed 310
Helix 40	AE4	B	748	756	Right-handed alpha
Helix 41	AE5	B	774	787	Right-handed alpha
Helix 42	AE6	B	790	804	Right-handed alpha
Helix 43	AE7	B	808	817	Right-handed alpha
Helix 44	AE8	B	818	822	Right-handed 310
Helix 45	AE9	B	824	828	Right-handed 310
Helix 46	AF1	B	836	861	Right-handed alpha
Helix 47	AF2	C	233	258	Right-handed alpha
Helix 48	AF3	C	263	271	Right-handed alpha
Helix 49	AF4	C	351	366	Right-handed alpha
Helix 50	AF5	C	368	403	Right-handed alpha
Helix 51	AF6	C	422	425	Right-handed 310
Helix 52	AF7	C	426	442	Right-handed alpha
Helix 53	AF8	C	498	509	Right-handed alpha
Helix 54	AF9	C	513	532	Right-handed alpha
Helix 55	AG1	C	549	561	Right-handed alpha
Helix 56	AG2	C	577	584	Right-handed alpha
Helix 57	AG3	C	589	607	Right-handed alpha
Helix 58	AG4	C	608	610	Right-handed 310
Helix 59	AG5	C	611	618	Right-handed alpha
Helix 60	AG6	C	655	677	Right-handed alpha
Helix 61	AG7	C	695	704	Right-handed alpha
Helix 62	AG8	C	711	715	Right-handed 310
Helix 63	AG9	C	716	726	Right-handed alpha
Helix 64	AH1	C	733	741	Right-handed alpha
Helix 65	AH2	C	748	756	Right-handed alpha
Helix 66	AH3	C	774	787	Right-handed alpha
Helix 67	AH4	C	790	804	Right-handed alpha
Helix 68	AH5	C	808	817	Right-handed alpha
Helix 69	AH6	C	824	828	Right-handed 310
Helix 70	AH7	C	829	834	Right-handed alpha
Helix 71	AH8	C	836	859	Right-handed alpha
Helix 72	AH9	D	233	259	Right-handed alpha
Helix 73	AI1	D	263	272	Right-handed alpha
Helix 74	AI2	D	311	315	Right-handed 310
Helix 75	AI3	D	351	366	Right-handed alpha
Helix 76	AI4	D	368	403	Right-handed alpha
Helix 77	AI5	D	422	425	Right-handed 310
Helix 78	AI6	D	426	433	Right-handed alpha
Helix 79	AI7	D	499	508	Right-handed alpha
Helix 80	AI8	D	511	533	Right-handed alpha
Helix 81	AI9	D	549	561	Right-handed alpha
Helix 82	AJ1	D	577	585	Right-handed alpha
Helix 83	AJ2	D	589	607	Right-handed alpha
Helix 84	AJ3	D	608	610	Right-handed 310
Helix 85	AJ4	D	611	618	Right-handed alpha
Helix 86	AJ5	D	655	678	Right-handed alpha
Helix 87	AJ6	D	695	704	Right-handed alpha
Helix 88	AJ7	D	711	715	Right-handed 310
Helix 89	AJ8	D	716	727	Right-handed alpha
Helix 90	AJ9	D	733	741	Right-handed alpha
Helix 91	AK1	D	743	747	Right-handed 310
Helix 92	AK2	D	748	756	Right-handed alpha
Helix 93	AK3	D	774	787	Right-handed alpha
Helix 94	AK4	D	790	804	Right-handed alpha
Helix 95	AK5	D	808	817	Right-handed alpha
Helix 96	AK6	D	824	828	Right-handed 310
Helix 97	AK7	D	829	834	Right-handed alpha
Helix 98	AK8	D	836	860	Right-handed alpha

There are 13 sheets in PDB entry 8HUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	225	first strand
Strand 2	D	221	224	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	414	420	first strand
Strand 2	A	535	540	parallel
Strand 3	A	568	573	parallel
Strand 4	A	621	625	parallel
Strand 5	A	683	684	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	687	688	first strand
Strand 2	A	706	709	parallel
Strand 3	A	729	732	parallel
Strand 4	A	758	761	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	225	first strand
Strand 2	C	221	225	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	326	first strand
Strand 2	B	329	333	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	414	416	first strand
Strand 2	B	535	542	parallel
Strand 3	B	568	575	parallel
Strand 4	B	621	627	parallel
Strand 5	B	683	684	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	687	688	first strand
Strand 2	B	706	709	parallel
Strand 3	B	729	732	parallel
Strand 4	B	759	761	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	322	326	first strand
Strand 2	C	329	333	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	414	420	first strand
Strand 2	C	535	542	parallel
Strand 3	C	570	575	parallel
Strand 4	C	621	627	parallel
Strand 5	C	683	684	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	687	688	first strand
Strand 2	C	706	709	parallel
Strand 3	C	729	732	parallel
Strand 4	C	759	761	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	326	first strand
Strand 2	D	329	333	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	414	420	first strand
Strand 2	D	535	542	parallel
Strand 3	D	568	575	parallel
Strand 4	D	621	627	parallel
Strand 5	D	683	684	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	687	688	first strand
Strand 2	D	706	709	parallel
Strand 3	D	729	732	parallel
Strand 4	D	759	761	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HUB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HUB