Analysis of interatomic Contacts of Structural Units in PDB entry:
8HUC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HUC entry

There are 4 chains in PDB entry 8HUC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 7	ASP 275
B	GLY 11	ASP 275
C	ARG 12	ASP 275
D	TRP 9	ASP 275

There are 28 helices in PDB entry 8HUC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	33	Right-handed alpha
Helix 2	AA2	A	46	51	Right-handed 310
Helix 3	AA3	A	57	61	Right-handed 310
Helix 4	AA4	A	170	181	Right-handed alpha
Helix 5	AA5	A	185	189	Right-handed 310
Helix 6	AA6	A	190	197	Right-handed alpha
Helix 7	AA7	A	206	222	Right-handed alpha
Helix 8	AA8	B	21	33	Right-handed alpha
Helix 9	AA9	B	46	51	Right-handed 310
Helix 10	AB1	B	57	61	Right-handed 310
Helix 11	AB2	B	170	181	Right-handed alpha
Helix 12	AB3	B	185	189	Right-handed 310
Helix 13	AB4	B	190	197	Right-handed alpha
Helix 14	AB5	B	206	222	Right-handed alpha
Helix 15	AB6	C	21	33	Right-handed alpha
Helix 16	AB7	C	46	51	Right-handed 310
Helix 17	AB8	C	57	61	Right-handed 310
Helix 18	AB9	C	170	181	Right-handed alpha
Helix 19	AC1	C	185	189	Right-handed 310
Helix 20	AC2	C	190	197	Right-handed alpha
Helix 21	AC3	C	206	222	Right-handed alpha
Helix 22	AC4	D	21	33	Right-handed alpha
Helix 23	AC5	D	46	51	Right-handed 310
Helix 24	AC6	D	57	61	Right-handed 310
Helix 25	AC7	D	170	181	Right-handed alpha
Helix 26	AC8	D	185	189	Right-handed 310
Helix 27	AC9	D	190	199	Right-handed alpha
Helix 28	AD1	D	206	222	Right-handed alpha

There are 6 sheets in PDB entry 8HUC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	19	first strand
Strand 2	A	99	114	anti-parallel
Strand 3	A	117	130	anti-parallel
Strand 4	A	133	145	anti-parallel
Strand 5	A	80	90	anti-parallel
Strand 6	A	226	234	anti-parallel
Strand 7	A	265	275	anti-parallel
Strand 8	A	255	262	anti-parallel
Strand 9	A	244	252	anti-parallel
Strand 10	A	163	167	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	19	first strand
Strand 2	B	99	114	anti-parallel
Strand 3	B	117	130	anti-parallel
Strand 4	B	133	145	anti-parallel
Strand 5	B	80	90	anti-parallel
Strand 6	B	227	234	anti-parallel
Strand 7	B	265	274	anti-parallel
Strand 8	B	255	262	anti-parallel
Strand 9	B	244	252	anti-parallel
Strand 10	B	163	167	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	238	239	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	19	first strand
Strand 2	C	99	113	anti-parallel
Strand 3	C	118	130	anti-parallel
Strand 4	C	133	145	anti-parallel
Strand 5	C	80	90	anti-parallel
Strand 6	C	226	234	anti-parallel
Strand 7	C	265	275	anti-parallel
Strand 8	C	255	262	anti-parallel
Strand 9	C	244	252	anti-parallel
Strand 10	C	163	167	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	238	239	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	19	first strand
Strand 2	D	99	112	anti-parallel
Strand 3	D	119	130	anti-parallel
Strand 4	D	133	145	anti-parallel
Strand 5	D	80	90	anti-parallel
Strand 6	D	226	234	anti-parallel
Strand 7	D	265	275	anti-parallel
Strand 8	D	255	262	anti-parallel
Strand 9	D	244	250	anti-parallel
Strand 10	D	163	167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HUC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HUC