Analysis of interatomic Contacts of Structural Units in PDB entry:
8HUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HUD entry

There are 4 chains in PDB entry 8HUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 38VAL 1105
B
 G 0 A 71
C
 C 1 C 28
D
 A 1 G 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8HUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 71Right-handed alpha
Helix 2
AA2
A
82 93Right-handed alpha
Helix 3
AA3
A
96 108Right-handed alpha
Helix 4
AA4
A
127 140Right-handed alpha
Helix 5
AA5
A
143 155Right-handed alpha
Helix 6
AA6
A
178 196Right-handed alpha
Helix 7
AA7
A
201 213Right-handed alpha
Helix 8
AA8
A
250 255Right-handed 310
Helix 9
AA9
A
271 286Right-handed alpha
Helix 10
AB1
A
294 308Right-handed alpha
Helix 11
AB2
A
312 322Right-handed alpha
Helix 12
AB3
A
345 358Right-handed alpha
Helix 13
AB4
A
365 379Right-handed alpha
Helix 14
AB5
A
381 392Right-handed alpha
Helix 15
AB6
A
397 411Right-handed alpha
Helix 16
AB7
A
412 415Right-handed 310
Helix 17
AB8
A
422 436Right-handed alpha
Helix 18
AB9
A
439 445Right-handed alpha
Helix 19
AC1
A
454 460Right-handed alpha
Helix 20
AC2
A
466 470Right-handed alpha
Helix 21
AC3
A
476 495Right-handed alpha
Helix 22
AC4
A
685 700Right-handed alpha
Helix 23
AC5
A
845 858Right-handed alpha
Helix 24
AC6
A
871 884Right-handed alpha
Helix 25
AC7
A
889 898Right-handed alpha
Helix 26
AC8
A
931 935Right-handed 310
Helix 27
AC9
A
988 995Right-handed alpha
Helix 28
AD1
A
1007 1011Right-handed 310
Helix 29
AD2
A
1027 1031Right-handed 310
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There are 7 sheets in PDB entry 8HUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
418 419anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
287 288anti-parallel
Strand 3
A
328 329anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
339 340anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
916 923first strand
Strand 2
A
834 842anti-parallel
Strand 3
A
826 831anti-parallel
Strand 4
A
943 945anti-parallel
Strand 5
A
928 929anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 970first strand
Strand 2
A
950 957anti-parallel
Strand 3
A
1013 1014anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
964 970first strand
Strand 2
A
950 957anti-parallel
Strand 3
A
1018 1019anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1074 1075first strand
Strand 2
A
1047 1052anti-parallel
Strand 3
A
1033 1040anti-parallel
Strand 4
A
1024 1026anti-parallel
Strand 5
A
1083 1087anti-parallel
Strand 6
A
1093 1095anti-parallel
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