Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HVC entry

There is 1 chain in PDB entry 8HVC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38ALA 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 8HVC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 85Right-handed alpha
Helix 2
AA2
A
110 115Right-handed alpha
Helix 3
AA3
A
133 148Right-handed alpha
Helix 4
AA4
A
180 194Right-handed alpha
Helix 5
AA5
A
210 214Right-handed 310
Helix 6
AA6
A
220 234Right-handed alpha
Helix 7
AA7
A
248 253Right-handed alpha
Helix 8
AA8
A
255 257Right-handed 310
Helix 9
AA9
A
276 295Right-handed alpha
Helix 10
AB1
A
308 314Right-handed 310
Helix 11
AB2
A
315 327Right-handed alpha
Helix 12
AB3
A
331 349Right-handed alpha
Helix 13
AB4
A
387 394Right-handed alpha
Helix 14
AB5
A
402 404Right-handed 310
Helix 15
AB6
A
415 422Right-handed alpha
Helix 16
AB7
A
457 478Right-handed alpha
Helix 17
AB8
A
485 497Right-handed alpha
Helix 18
AB9
A
528 530Right-handed 310
Helix 19
AC1
A
591 594Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 8HVC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 57first strand
Strand 2
A
153 161anti-parallel
Strand 3
A
119 123anti-parallel
Strand 4
A
127 131anti-parallel
Strand 5
A
102 106parallel
Strand 6
A
64 66parallel
Strand 7
A
91 92parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
441 449parallel
Strand 3
A
398 400parallel
Strand 4
A
375 378parallel
Strand 5
A
353 357parallel
Strand 6
A
298 302parallel
Strand 7
A
237 244parallel
Strand 8
A
198 202parallel
Strand 9
A
167 173parallel
Strand 10
A
441 449parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
267 272anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 429first strand
Strand 2
A
432 433anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 536first strand
Strand 2
A
522 527anti-parallel
Strand 3
A
513 519anti-parallel
Strand 4
A
542 546anti-parallel
Strand 5
A
552 556anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 536first strand
Strand 2
A
522 527anti-parallel
Strand 3
A
513 519anti-parallel
Strand 4
A
635 638anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
562 564first strand
Strand 2
A
583 585anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
570 571first strand
Strand 2
A
574 575anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 600first strand
Strand 2
A
605 609anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
615 618first strand
Strand 2
A
625 628anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il