Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HVI entry

There are 5 chains in PDB entry 8HVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	GLU 39	GLU 346
B	LEU 5	PHE 354
C	SER 2	ASN 340
D	SER 8	ARG 62
H	ASP 1	LEU 235

There are 25 helices in PDB entry 8HVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	39	72	Right-handed alpha
Helix 2	AA2	R	75	91	Right-handed alpha
Helix 3	AA3	R	94	102	Right-handed alpha
Helix 4	AA4	R	112	146	Right-handed alpha
Helix 5	AA5	R	149	153	Right-handed 310
Helix 6	AA6	R	157	181	Right-handed alpha
Helix 7	AA7	R	193	229	Right-handed alpha
Helix 8	AA8	R	233	271	Right-handed alpha
Helix 9	AA9	R	286	302	Right-handed alpha
Helix 10	AB1	R	303	313	Right-handed alpha
Helix 11	AB2	R	316	331	Right-handed alpha
Helix 12	AB3	R	335	344	Right-handed alpha
Helix 13	AB4	B	6	31	Right-handed alpha
Helix 14	AB5	B	45	54	Right-handed alpha
Helix 15	AB6	B	207	212	Right-handed alpha
Helix 16	AB7	B	213	216	Right-handed 310
Helix 17	AB8	B	241	255	Right-handed alpha
Helix 18	AB9	B	270	278	Right-handed alpha
Helix 19	AC1	B	295	310	Right-handed alpha
Helix 20	AC2	B	331	352	Right-handed alpha
Helix 21	AC3	C	3	26	Right-handed alpha
Helix 22	AC4	C	29	34	Right-handed 310
Helix 23	AC5	D	9	22	Right-handed alpha
Helix 24	AC6	D	30	43	Right-handed alpha
Helix 25	AC7	H	28	32	Right-handed 310

There are 12 sheets in PDB entry 8HVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	35	40	parallel
Strand 4	B	220	224	parallel
Strand 5	B	263	267	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	335	339	anti-parallel
Strand 3	C	327	331	anti-parallel
Strand 4	C	315	320	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	63	first strand
Strand 2	C	69	74	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	91	94	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	105	first strand
Strand 2	C	111	116	anti-parallel
Strand 3	C	121	125	anti-parallel
Strand 4	C	134	138	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	156	161	anti-parallel
Strand 3	C	166	170	anti-parallel
Strand 4	C	175	180	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	192	first strand
Strand 2	C	198	203	anti-parallel
Strand 3	C	207	212	anti-parallel
Strand 4	C	218	223	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	234	first strand
Strand 2	C	240	245	anti-parallel
Strand 3	C	250	254	anti-parallel
Strand 4	C	260	264	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	277	first strand
Strand 2	C	285	288	anti-parallel
Strand 3	C	294	297	anti-parallel
Strand 4	C	306	308	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	23	first strand
Strand 2	H	78	84	anti-parallel
Strand 3	H	68	73	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	47	51	first strand
Strand 2	H	33	37	anti-parallel
Strand 3	H	95	99	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	130	first strand
Strand 2	H	143	149	anti-parallel
Strand 3	H	199	204	anti-parallel
Strand 4	H	192	195	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	134	136	first strand
Strand 2	H	231	234	parallel
Strand 3	H	213	217	anti-parallel
Strand 4	H	163	167	anti-parallel
Strand 5	H	173	178	anti-parallel
Strand 6	H	182	183	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVI