Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HVJ entry

There are 3 chains in PDB entry 8HVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 7GLU 287
B
 ARG 11GLU 287
C
 THR 21ILE 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8HVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
71 76Right-handed alpha
Helix 3
AA3
A
81 99Right-handed alpha
Helix 4
AA4
A
105 111Right-handed alpha
Helix 5
AA5
A
122 172Right-handed alpha
Helix 6
AA6
A
173 192Right-handed alpha
Helix 7
AA7
A
198 210Right-handed alpha
Helix 8
AA8
A
215 233Right-handed alpha
Helix 9
AA9
A
237 240Right-handed 310
Helix 10
AB1
A
241 258Right-handed alpha
Helix 11
AB2
A
262 283Right-handed alpha
Helix 12
AB3
A
284 286Right-handed 310
Helix 13
AB4
B
45 55Right-handed alpha
Helix 14
AB5
B
81 94Right-handed alpha
Helix 15
AB6
B
105 111Right-handed alpha
Helix 16
AB7
B
122 172Right-handed alpha
Helix 17
AB8
B
173 195Right-handed alpha
Helix 18
AB9
B
200 210Right-handed alpha
Helix 19
AC1
B
212 232Right-handed alpha
Helix 20
AC2
B
238 258Right-handed alpha
Helix 21
AC3
B
262 283Right-handed alpha
Helix 22
AC4
C
45 55Right-handed alpha
Helix 23
AC5
C
83 95Right-handed alpha
Helix 24
AC6
C
112 118Right-handed alpha
Helix 25
AC7
C
122 192Right-handed alpha
Helix 26
AC8
C
197 213Right-handed alpha
Helix 27
AC9
C
214 232Right-handed alpha
Helix 28
AD1
C
240 258Right-handed alpha
Helix 29
AD2
C
262 284Right-handed alpha
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There are 4 sheets in PDB entry 8HVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
18 27anti-parallel
Strand 3
A
60 70anti-parallel
Strand 4
A
32 37parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 14first strand
Strand 2
B
19 21anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
60 64parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
22 24first strand
Strand 2
C
64 66anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il