Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HVQ entry

There are 2 chains in PDB entry 8HVQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ASP 233
B
 SER 3ASP 233
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8HVQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 36Right-handed alpha
Helix 2
AA2
A
47 55Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
85 100Right-handed alpha
Helix 5
AA5
A
118 126Right-handed alpha
Helix 6
AA6
A
136 150Right-handed alpha
Helix 7
AA7
A
171 185Right-handed alpha
Helix 8
AA8
A
185 190Right-handed alpha
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
224 226Right-handed 310
Helix 11
AB2
B
22 36Right-handed alpha
Helix 12
AB3
B
47 55Right-handed alpha
Helix 13
AB4
B
67 69Right-handed 310
Helix 14
AB5
B
85 100Right-handed alpha
Helix 15
AB6
B
118 126Right-handed alpha
Helix 16
AB7
B
136 150Right-handed alpha
Helix 17
AB8
B
171 185Right-handed alpha
Helix 18
AB9
B
185 190Right-handed alpha
Helix 19
AC1
B
209 221Right-handed alpha
Helix 20
AC2
B
224 226Right-handed 310
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There are 6 sheets in PDB entry 8HVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
71 74anti-parallel
Strand 3
A
63 66anti-parallel
Strand 4
A
39 43parallel
Strand 5
A
6 10parallel
Strand 6
A
228 232parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 107first strand
Strand 2
A
162 168anti-parallel
Strand 3
A
200 205anti-parallel
Strand 4
A
191 194anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 115first strand
Strand 2
A
151 154parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
71 74anti-parallel
Strand 3
B
63 66anti-parallel
Strand 4
B
39 43parallel
Strand 5
B
6 10parallel
Strand 6
B
228 232parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 107first strand
Strand 2
B
162 168anti-parallel
Strand 3
B
200 205anti-parallel
Strand 4
B
191 194anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 115first strand
Strand 2
B
152 154parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il