Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HVR entry

There are 13 chains in PDB entry 8HVR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 2	ILE 227
B	MET 1	ASP 233
C	ALA 16	SER 1129
D	PHE 7	MET 1265
E	GLU 9	ILE 85
F	ALA 210	LEU 510
G	ASP 19	ALA 110
H	THR 3	ALA 161
I	ALA 17	ALA 270
J	ALA 17	ALA 270
K	THR 239	SER 311
O	C 5	A 65
P	T 1	G 61

There are152 helices in PDB entry 8HVR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	44	Right-handed alpha
Helix 2	AA2	A	72	82	Right-handed alpha
Helix 3	AA3	A	108	110	Right-handed 310
Helix 4	AA4	A	148	152	Right-handed 310
Helix 5	AA5	A	203	225	Right-handed alpha
Helix 6	AA6	B	29	44	Right-handed alpha
Helix 7	AA7	B	72	82	Right-handed alpha
Helix 8	AA8	B	153	158	Right-handed alpha
Helix 9	AA9	B	203	220	Right-handed alpha
Helix 10	AB1	B	222	226	Right-handed 310
Helix 11	AB2	C	38	50	Right-handed alpha
Helix 12	AB3	C	51	65	Right-handed alpha
Helix 13	AB4	C	73	81	Right-handed alpha
Helix 14	AB5	C	106	113	Right-handed alpha
Helix 15	AB6	C	222	229	Right-handed alpha
Helix 16	AB7	C	232	240	Right-handed alpha
Helix 17	AB8	C	243	253	Right-handed alpha
Helix 18	AB9	C	257	270	Right-handed alpha
Helix 19	AC1	C	276	288	Right-handed alpha
Helix 20	AC2	C	297	309	Right-handed alpha
Helix 21	AC3	C	320	337	Right-handed alpha
Helix 22	AC4	C	366	392	Right-handed alpha
Helix 23	AC5	C	399	404	Right-handed alpha
Helix 24	AC6	C	406	418	Right-handed alpha
Helix 25	AC7	C	430	439	Right-handed alpha
Helix 26	AC8	C	455	460	Right-handed alpha
Helix 27	AC9	C	462	466	Right-handed 310
Helix 28	AD1	C	520	525	Right-handed alpha
Helix 29	AD2	C	549	553	Right-handed 310
Helix 30	AD3	C	568	572	Right-handed 310
Helix 31	AD4	C	576	580	Right-handed 310
Helix 32	AD5	C	587	598	Right-handed alpha
Helix 33	AD6	C	599	601	Right-handed 310
Helix 34	AD7	C	616	623	Right-handed alpha
Helix 35	AD8	C	725	730	Right-handed alpha
Helix 36	AD9	C	765	770	Right-handed 310
Helix 37	AE1	C	801	812	Right-handed alpha
Helix 38	AE2	C	886	890	Right-handed 310
Helix 39	AE3	C	906	912	Right-handed alpha
Helix 40	AE4	C	914	928	Right-handed alpha
Helix 41	AE5	C	937	947	Right-handed alpha
Helix 42	AE6	C	966	976	Right-handed alpha
Helix 43	AE7	C	1021	1026	Right-handed alpha
Helix 44	AE8	C	1054	1065	Right-handed alpha
Helix 45	AE9	C	1066	1075	Right-handed alpha
Helix 46	AF1	C	1082	1094	Right-handed alpha
Helix 47	AF2	C	1103	1115	Right-handed alpha
Helix 48	AF3	D	16	23	Right-handed alpha
Helix 49	AF4	D	48	53	Right-handed alpha
Helix 50	AF5	D	84	90	Right-handed 310
Helix 51	AF6	D	110	115	Right-handed alpha
Helix 52	AF7	D	121	130	Right-handed alpha
Helix 53	AF8	D	140	147	Right-handed alpha
Helix 54	AF9	D	147	188	Right-handed alpha
Helix 55	AG1	D	192	228	Right-handed alpha
Helix 56	AG2	D	237	248	Right-handed alpha
Helix 57	AG3	D	257	267	Right-handed alpha
Helix 58	AG4	D	269	283	Right-handed alpha
Helix 59	AG5	D	285	304	Right-handed alpha
Helix 60	AG6	D	308	311	Right-handed 310
Helix 61	AG7	D	321	325	Right-handed 310
Helix 62	AG8	D	338	360	Right-handed alpha
Helix 63	AG9	D	363	383	Right-handed alpha
Helix 64	AH1	D	402	406	Right-handed 310
Helix 65	AH2	D	411	416	Right-handed alpha
Helix 66	AH3	D	445	452	Right-handed alpha
Helix 67	AH4	D	452	463	Right-handed alpha
Helix 68	AH5	D	468	479	Right-handed alpha
Helix 69	AH6	D	480	491	Right-handed alpha
Helix 70	AH7	D	505	507	Right-handed 310
Helix 71	AH8	D	525	532	Right-handed 310
Helix 72	AH9	D	548	558	Right-handed alpha
Helix 73	AI1	D	560	564	Right-handed 310
Helix 74	AI2	D	580	590	Right-handed alpha
Helix 75	AI3	D	606	617	Right-handed alpha
Helix 76	AI4	D	636	640	Right-handed 310
Helix 77	AI5	D	662	672	Right-handed alpha
Helix 78	AI6	D	685	699	Right-handed alpha
Helix 79	AI7	D	700	721	Right-handed alpha
Helix 80	AI8	D	735	756	Right-handed alpha
Helix 81	AI9	D	761	788	Right-handed alpha
Helix 82	AJ1	D	792	799	Right-handed alpha
Helix 83	AJ2	D	805	814	Right-handed alpha
Helix 84	AJ3	D	840	877	Right-handed alpha
Helix 85	AJ4	D	939	950	Right-handed alpha
Helix 86	AJ5	D	970	974	Right-handed alpha
Helix 87	AJ6	D	988	999	Right-handed alpha
Helix 88	AJ7	D	1000	1002	Right-handed 310
Helix 89	AJ8	D	1022	1031	Right-handed alpha
Helix 90	AJ9	D	1100	1109	Right-handed alpha
Helix 91	AK1	D	1109	1127	Right-handed alpha
Helix 92	AK2	D	1133	1145	Right-handed alpha
Helix 93	AK3	D	1166	1179	Right-handed alpha
Helix 94	AK4	D	1192	1199	Right-handed alpha
Helix 95	AK5	D	1202	1209	Right-handed alpha
Helix 96	AK6	D	1213	1223	Right-handed alpha
Helix 97	AK7	D	1231	1238	Right-handed alpha
Helix 98	AK8	D	1243	1246	Right-handed 310
Helix 99	AK9	D	1247	1252	Right-handed alpha
Helix 100	AL1	D	1258	1265	Right-handed alpha
Helix 101	AL2	E	15	24	Right-handed alpha
Helix 102	AL3	E	26	45	Right-handed alpha
Helix 103	AL4	E	66	78	Right-handed alpha
Helix 104	AL5	F	213	223	Right-handed alpha
Helix 105	AL6	F	229	252	Right-handed alpha
Helix 106	AL7	F	257	292	Right-handed alpha
Helix 107	AL8	F	299	317	Right-handed alpha
Helix 108	AL9	F	325	346	Right-handed alpha
Helix 109	AM1	F	352	374	Right-handed alpha
Helix 110	AM2	F	378	387	Right-handed alpha
Helix 111	AM3	F	389	400	Right-handed alpha
Helix 112	AM4	F	417	421	Right-handed 310
Helix 113	AM5	F	429	450	Right-handed alpha
Helix 114	AM6	F	451	462	Right-handed alpha
Helix 115	AM7	F	471	476	Right-handed alpha
Helix 116	AM8	F	482	498	Right-handed alpha
Helix 117	AM9	F	499	503	Right-handed 310
Helix 118	AN1	G	81	90	Right-handed alpha
Helix 119	AN2	G	91	110	Right-handed alpha
Helix 120	AN3	H	53	58	Right-handed alpha
Helix 121	AN4	H	64	76	Right-handed alpha
Helix 122	AN5	H	85	100	Right-handed alpha
Helix 123	AN6	H	101	119	Right-handed alpha
Helix 124	AN7	H	123	142	Right-handed alpha
Helix 125	AN8	H	147	155	Right-handed alpha
Helix 126	AN9	H	156	158	Right-handed 310
Helix 127	AO1	I	46	58	Right-handed alpha
Helix 128	AO2	I	65	75	Right-handed alpha
Helix 129	AO3	I	82	97	Right-handed alpha
Helix 130	AO4	I	119	138	Right-handed alpha
Helix 131	AO5	I	139	152	Right-handed alpha
Helix 132	AO6	I	164	193	Right-handed alpha
Helix 133	AO7	I	195	209	Right-handed alpha
Helix 134	AO8	I	212	225	Right-handed alpha
Helix 135	AO9	I	229	247	Right-handed alpha
Helix 136	AP1	I	252	264	Right-handed alpha
Helix 137	AP2	J	46	58	Right-handed alpha
Helix 138	AP3	J	66	75	Right-handed alpha
Helix 139	AP4	J	81	97	Right-handed alpha
Helix 140	AP5	J	119	137	Right-handed alpha
Helix 141	AP6	J	139	152	Right-handed alpha
Helix 142	AP7	J	164	192	Right-handed alpha
Helix 143	AP8	J	194	209	Right-handed alpha
Helix 144	AP9	J	212	227	Right-handed alpha
Helix 145	AQ1	J	229	247	Right-handed alpha
Helix 146	AQ2	J	252	264	Right-handed alpha
Helix 147	AQ3	K	240	249	Right-handed alpha
Helix 148	AQ4	K	250	255	Right-handed 310
Helix 149	AQ5	K	257	267	Right-handed alpha
Helix 150	AQ6	K	271	278	Right-handed alpha
Helix 151	AQ7	K	279	285	Right-handed alpha
Helix 152	AQ8	K	290	305	Right-handed alpha

There are 44 sheets in PDB entry 8HVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	13	first strand
Strand 2	A	18	26	anti-parallel
Strand 3	A	190	198	anti-parallel
Strand 4	A	171	178	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	100	first strand
Strand 2	A	133	144	anti-parallel
Strand 3	A	47	55	anti-parallel
Strand 4	A	161	163	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	116	118	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	124	128	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	147	first strand
Strand 2	A	166	167	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	18	26	anti-parallel
Strand 3	B	186	198	anti-parallel
Strand 4	B	171	183	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	99	first strand
Strand 2	B	134	144	anti-parallel
Strand 3	B	47	56	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	116	117	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	106	first strand
Strand 2	B	124	128	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	166	167	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	24	first strand
Strand 2	C	957	958	parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	100	first strand
Strand 2	C	118	129	anti-parallel
Strand 3	C	134	146	anti-parallel
Strand 4	H	46	50	anti-parallel
Strand 5	H	35	39	anti-parallel
Strand 6	H	16	24	anti-parallel
Strand 7	H	9	12	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	156	first strand
Strand 2	C	159	163	anti-parallel
Strand 3	C	423	425	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	362	365	first strand
Strand 2	C	165	169	anti-parallel
Strand 3	C	440	442	parallel
Strand 4	C	483	485	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	180	first strand
Strand 2	C	185	193	anti-parallel
Strand 3	C	200	204	anti-parallel
Strand 4	C	211	214	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	342	first strand
Strand 2	C	348	350	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	498	506	anti-parallel
Strand 3	C	509	517	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	498	506	anti-parallel
Strand 3	C	564	566	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	629	first strand
Strand 2	C	687	689	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	653	657	first strand
Strand 2	C	643	648	anti-parallel
Strand 3	C	634	639	anti-parallel
Strand 4	C	681	682	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	695	first strand
Strand 2	C	698	699	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	992	993	first strand
Strand 2	C	1008	1017	anti-parallel
Strand 3	C	870	872	anti-parallel
Strand 4	C	878	885	anti-parallel
Strand 5	C	721	724	parallel
Strand 6	C	901	903	anti-parallel
Strand 7	C	702	709	parallel
Strand 8	C	1008	1017	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	735	746	first strand
Strand 2	C	851	863	anti-parallel
Strand 3	C	831	840	anti-parallel
Strand 4	C	781	782	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	754	755	first strand
Strand 2	C	791	793	anti-parallel
Strand 3	C	819	820	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	787	789	first strand
Strand 2	C	823	824	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1027	1029	first strand
Strand 2	D	425	432	anti-parallel
Strand 3	D	540	544	anti-parallel
Strand 4	D	496	499	anti-parallel
Strand 5	D	509	517	anti-parallel
Strand 6	D	440	444	parallel
Strand 7	D	522	524	anti-parallel
Strand 8	D	425	432	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1052	1053	first strand
Strand 2	D	420	421	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1121	1123	first strand
Strand 2	D	9	11	anti-parallel
Strand 3	D	1226	1227	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	24	27	first strand
Strand 2	D	92	102	parallel
Strand 3	D	313	318	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	234	235	first strand
Strand 2	D	134	139	anti-parallel
Strand 3	D	252	255	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	327	330	first strand
Strand 2	D	334	337	anti-parallel
Strand 3	F	404	405	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	603	604	first strand
Strand 2	D	625	629	parallel
Strand 3	D	657	661	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	881	883	first strand
Strand 2	D	968	969	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	892	895	first strand
Strand 2	D	953	957	anti-parallel
Strand 3	D	919	920	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	924	925	first strand
Strand 2	D	930	932	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1070	1074	first strand
Strand 2	D	1057	1063	anti-parallel
Strand 3	D	1046	1052	anti-parallel
Strand 4	D	1086	1088	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1163	1165	first strand
Strand 2	D	1147	1151	anti-parallel
Strand 3	D	1185	1189	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1253	1257	first strand
Strand 2	E	80	84	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	45	first strand
Strand 2	G	27	34	anti-parallel
Strand 3	G	62	64	anti-parallel
Strand 4	G	54	55	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	27	28	first strand
Strand 2	H	31	32	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	25	28	first strand
Strand 2	I	34	37	anti-parallel
Strand 3	I	40	42	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	102	105	first strand
Strand 2	I	108	111	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	25	28	first strand
Strand 2	J	34	37	anti-parallel
Strand 3	J	40	41	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	64	65	first strand
Strand 2	J	108	111	anti-parallel
Strand 3	J	102	105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HVR

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HVR