Analysis of interatomic Contacts of Structural Units in PDB entry:
8HW3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HW3 entry

There are 2 chains in PDB entry 8HW3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	SER 852
B	GLY 26	SER 852

There are 66 helices in PDB entry 8HW3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed 310
Helix 2	AA2	A	79	81	Right-handed 310
Helix 3	AA3	A	85	98	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	109	115	Right-handed alpha
Helix 6	AA6	A	121	144	Right-handed alpha
Helix 7	AA7	A	146	160	Right-handed alpha
Helix 8	AA8	A	164	169	Right-handed 310
Helix 9	AA9	A	186	190	Right-handed 310
Helix 10	AB1	A	199	203	Right-handed 310
Helix 11	AB2	A	226	242	Right-handed alpha
Helix 12	AB3	A	242	248	Right-handed alpha
Helix 13	AB4	A	262	267	Right-handed 310
Helix 14	AB5	A	268	283	Right-handed alpha
Helix 15	AB6	A	287	293	Right-handed alpha
Helix 16	AB7	A	302	312	Right-handed alpha
Helix 17	AB8	A	321	330	Right-handed alpha
Helix 18	AB9	A	340	345	Right-handed alpha
Helix 19	AC1	A	368	384	Right-handed alpha
Helix 20	AC2	A	392	405	Right-handed alpha
Helix 21	AC3	A	415	426	Right-handed alpha
Helix 22	AC4	A	435	439	Right-handed alpha
Helix 23	AC5	A	452	467	Right-handed alpha
Helix 24	AC6	A	614	619	Right-handed alpha
Helix 25	AC7	A	635	638	Right-handed 310
Helix 26	AC8	A	639	647	Right-handed alpha
Helix 27	AC9	A	647	654	Right-handed alpha
Helix 28	AD1	A	696	710	Right-handed alpha
Helix 29	AD2	A	763	771	Right-handed alpha
Helix 30	AD3	A	774	782	Right-handed alpha
Helix 31	AD4	A	783	787	Right-handed 310
Helix 32	AD5	A	807	809	Right-handed 310
Helix 33	AD6	A	848	852	Right-handed 310
Helix 34	AD7	B	28	33	Right-handed 310
Helix 35	AD8	B	79	81	Right-handed 310
Helix 36	AD9	B	85	98	Right-handed alpha
Helix 37	AE1	B	103	107	Right-handed 310
Helix 38	AE2	B	109	115	Right-handed alpha
Helix 39	AE3	B	121	144	Right-handed alpha
Helix 40	AE4	B	146	160	Right-handed alpha
Helix 41	AE5	B	164	169	Right-handed 310
Helix 42	AE6	B	186	190	Right-handed 310
Helix 43	AE7	B	199	203	Right-handed 310
Helix 44	AE8	B	226	242	Right-handed alpha
Helix 45	AE9	B	242	248	Right-handed alpha
Helix 46	AF1	B	262	267	Right-handed 310
Helix 47	AF2	B	268	283	Right-handed alpha
Helix 48	AF3	B	287	293	Right-handed alpha
Helix 49	AF4	B	302	312	Right-handed alpha
Helix 50	AF5	B	321	330	Right-handed alpha
Helix 51	AF6	B	340	345	Right-handed alpha
Helix 52	AF7	B	368	384	Right-handed alpha
Helix 53	AF8	B	392	405	Right-handed alpha
Helix 54	AF9	B	415	426	Right-handed alpha
Helix 55	AG1	B	435	439	Right-handed alpha
Helix 56	AG2	B	452	467	Right-handed alpha
Helix 57	AG3	B	614	619	Right-handed alpha
Helix 58	AG4	B	635	638	Right-handed 310
Helix 59	AG5	B	639	647	Right-handed alpha
Helix 60	AG6	B	647	654	Right-handed alpha
Helix 61	AG7	B	696	710	Right-handed alpha
Helix 62	AG8	B	763	771	Right-handed alpha
Helix 63	AG9	B	774	782	Right-handed alpha
Helix 64	AH1	B	783	787	Right-handed 310
Helix 65	AH2	B	807	809	Right-handed 310
Helix 66	AH3	B	848	852	Right-handed 310

There are 16 sheets in PDB entry 8HW3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	76	77	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	60	first strand
Strand 2	A	68	69	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	722	723	first strand
Strand 2	A	220	222	anti-parallel
Strand 3	A	811	815	anti-parallel
Strand 4	A	177	181	anti-parallel
Strand 5	A	728	737	anti-parallel
Strand 6	A	754	761	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	298	first strand
Strand 2	A	257	260	parallel
Strand 3	A	713	718	parallel
Strand 4	A	658	661	parallel
Strand 5	A	622	624	parallel
Strand 6	A	430	434	parallel
Strand 7	A	362	365	parallel
Strand 8	A	318	319	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	471	475	anti-parallel
Strand 3	A	480	485	anti-parallel
Strand 4	A	507	512	anti-parallel
Strand 5	A	579	588	anti-parallel
Strand 6	A	534	541	anti-parallel
Strand 7	A	558	560	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	534	541	anti-parallel
Strand 3	A	579	588	anti-parallel
Strand 4	A	574	576	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	525	first strand
Strand 2	A	566	571	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	A	679	681	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	76	77	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	68	69	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	723	first strand
Strand 2	B	220	222	anti-parallel
Strand 3	B	811	815	anti-parallel
Strand 4	B	177	180	anti-parallel
Strand 5	B	728	737	anti-parallel
Strand 6	B	754	761	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	298	first strand
Strand 2	B	257	260	parallel
Strand 3	B	713	718	parallel
Strand 4	B	658	661	parallel
Strand 5	B	622	624	parallel
Strand 6	B	430	434	parallel
Strand 7	B	362	365	parallel
Strand 8	B	318	319	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	471	475	anti-parallel
Strand 3	B	480	485	anti-parallel
Strand 4	B	507	512	anti-parallel
Strand 5	B	579	588	anti-parallel
Strand 6	B	534	541	anti-parallel
Strand 7	B	558	560	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	547	first strand
Strand 2	B	534	541	anti-parallel
Strand 3	B	579	588	anti-parallel
Strand 4	B	574	576	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	525	first strand
Strand 2	B	566	571	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	B	679	681	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HW3

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HW3