Analysis of interatomic Contacts of Structural Units in PDB entry:
8HWD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HWD entry

There are 6 chains in PDB entry 8HWD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 323	PRO 688
F	GLY 323	LEU 686
D	GLY 323	PRO 688
E	GLY 323	LEU 686
C	GLY 323	GLU 691
B	GLY 323	LEU 700

There are 87 helices in PDB entry 8HWD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	324	336	Right-handed alpha
Helix 2	AA2	A	363	371	Right-handed alpha
Helix 3	AA3	A	372	375	Right-handed 310
Helix 4	AA4	A	376	381	Right-handed alpha
Helix 5	AA5	A	382	384	Right-handed 310
Helix 6	AA6	A	390	398	Right-handed alpha
Helix 7	AA7	A	429	434	Right-handed 310
Helix 8	AA8	A	447	451	Right-handed 310
Helix 9	AA9	A	458	469	Right-handed alpha
Helix 10	AB1	A	475	488	Right-handed alpha
Helix 11	AB2	A	508	521	Right-handed alpha
Helix 12	AB3	A	571	577	Right-handed alpha
Helix 13	AB4	A	615	619	Right-handed alpha
Helix 14	AB5	A	656	661	Right-handed alpha
Helix 15	AB6	A	664	680	Right-handed alpha
Helix 16	AB7	F	324	336	Right-handed alpha
Helix 17	AB8	F	363	371	Right-handed alpha
Helix 18	AB9	F	372	375	Right-handed 310
Helix 19	AC1	F	387	398	Right-handed alpha
Helix 20	AC2	F	430	435	Right-handed alpha
Helix 21	AC3	F	447	451	Right-handed 310
Helix 22	AC4	F	457	469	Right-handed alpha
Helix 23	AC5	F	475	488	Right-handed alpha
Helix 24	AC6	F	508	520	Right-handed alpha
Helix 25	AC7	F	657	661	Right-handed alpha
Helix 26	AC8	F	664	680	Right-handed alpha
Helix 27	AC9	D	324	336	Right-handed alpha
Helix 28	AD1	D	363	371	Right-handed alpha
Helix 29	AD2	D	372	375	Right-handed 310
Helix 30	AD3	D	376	381	Right-handed alpha
Helix 31	AD4	D	382	384	Right-handed 310
Helix 32	AD5	D	385	399	Right-handed alpha
Helix 33	AD6	D	429	434	Right-handed 310
Helix 34	AD7	D	447	451	Right-handed 310
Helix 35	AD8	D	457	469	Right-handed alpha
Helix 36	AD9	D	475	489	Right-handed alpha
Helix 37	AE1	D	508	521	Right-handed alpha
Helix 38	AE2	D	575	579	Right-handed 310
Helix 39	AE3	D	635	639	Right-handed 310
Helix 40	AE4	D	652	661	Right-handed alpha
Helix 41	AE5	D	664	680	Right-handed alpha
Helix 42	AE6	E	324	336	Right-handed alpha
Helix 43	AE7	E	363	371	Right-handed alpha
Helix 44	AE8	E	372	375	Right-handed 310
Helix 45	AE9	E	376	381	Right-handed alpha
Helix 46	AF1	E	388	400	Right-handed alpha
Helix 47	AF2	E	429	434	Right-handed 310
Helix 48	AF3	E	447	451	Right-handed 310
Helix 49	AF4	E	455	469	Right-handed alpha
Helix 50	AF5	E	472	475	Right-handed 310
Helix 51	AF6	E	476	489	Right-handed alpha
Helix 52	AF7	E	508	521	Right-handed alpha
Helix 53	AF8	E	667	680	Right-handed alpha
Helix 54	AF9	C	324	336	Right-handed alpha
Helix 55	AG1	C	363	371	Right-handed alpha
Helix 56	AG2	C	372	375	Right-handed 310
Helix 57	AG3	C	380	384	Right-handed 310
Helix 58	AG4	C	385	388	Right-handed 310
Helix 59	AG5	C	389	398	Right-handed alpha
Helix 60	AG6	C	447	451	Right-handed 310
Helix 61	AG7	C	455	469	Right-handed alpha
Helix 62	AG8	C	472	475	Right-handed 310
Helix 63	AG9	C	476	489	Right-handed alpha
Helix 64	AH1	C	508	521	Right-handed alpha
Helix 65	AH2	C	571	578	Right-handed alpha
Helix 66	AH3	C	614	619	Right-handed alpha
Helix 67	AH4	C	635	639	Right-handed 310
Helix 68	AH5	C	654	661	Right-handed alpha
Helix 69	AH6	C	664	680	Right-handed alpha
Helix 70	AH7	B	324	336	Right-handed alpha
Helix 71	AH8	B	363	371	Right-handed alpha
Helix 72	AH9	B	372	375	Right-handed 310
Helix 73	AI1	B	380	384	Right-handed 310
Helix 74	AI2	B	385	400	Right-handed alpha
Helix 75	AI3	B	430	435	Right-handed alpha
Helix 76	AI4	B	447	451	Right-handed 310
Helix 77	AI5	B	455	469	Right-handed alpha
Helix 78	AI6	B	475	488	Right-handed alpha
Helix 79	AI7	B	508	521	Right-handed alpha
Helix 80	AI8	B	528	532	Right-handed 310
Helix 81	AI9	B	541	546	Right-handed alpha
Helix 82	AJ1	B	571	578	Right-handed alpha
Helix 83	AJ2	B	614	619	Right-handed alpha
Helix 84	AJ3	B	632	641	Right-handed alpha
Helix 85	AJ4	B	654	661	Right-handed alpha
Helix 86	AJ5	B	664	680	Right-handed alpha
Helix 87	AJ6	B	693	700	Right-handed alpha

There are 22 sheets in PDB entry 8HWD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	341	first strand
Strand 2	A	347	351	anti-parallel
Strand 3	A	354	356	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	412	415	first strand
Strand 2	A	418	421	anti-parallel
Strand 3	A	427	428	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	526	first strand
Strand 2	A	553	554	parallel
Strand 3	A	600	602	parallel
Strand 4	A	498	500	parallel
Strand 5	A	621	623	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	629	631	first strand
Strand 2	A	648	650	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	339	342	first strand
Strand 2	F	346	350	anti-parallel
Strand 3	F	355	356	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	412	415	first strand
Strand 2	F	418	421	anti-parallel
Strand 3	F	426	428	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	339	341	first strand
Strand 2	D	347	351	anti-parallel
Strand 3	D	354	356	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	412	415	first strand
Strand 2	D	418	421	anti-parallel
Strand 3	D	427	428	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	499	500	first strand
Strand 2	D	599	602	parallel
Strand 3	D	552	553	parallel
Strand 4	D	524	525	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	629	631	first strand
Strand 2	D	648	650	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	342	first strand
Strand 2	E	346	350	anti-parallel
Strand 3	E	355	357	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	412	415	first strand
Strand 2	E	418	421	anti-parallel
Strand 3	E	427	428	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	341	first strand
Strand 2	C	347	351	anti-parallel
Strand 3	C	354	356	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	412	415	first strand
Strand 2	C	418	421	anti-parallel
Strand 3	C	426	428	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	500	first strand
Strand 2	C	599	602	parallel
Strand 3	C	552	555	parallel
Strand 4	C	524	526	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	581	583	first strand
Strand 2	C	593	595	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	628	631	first strand
Strand 2	C	647	650	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	B	347	348	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	412	415	first strand
Strand 2	B	418	421	anti-parallel
Strand 3	B	427	428	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	526	first strand
Strand 2	B	553	555	parallel
Strand 3	B	600	602	parallel
Strand 4	B	498	500	parallel
Strand 5	B	621	623	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	581	583	first strand
Strand 2	B	593	595	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	631	first strand
Strand 2	B	647	650	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HWD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HWD