Analysis of interatomic Contacts of Structural Units in PDB entry:
8HWJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HWJ entry

There are 4 chains in PDB entry 8HWJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 151GLU 312
B
 GLY 154GLU 312
C
 GLY 151GLU 312
D
 GLY 151GLU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 8HWJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
156 169Right-handed alpha
Helix 2
AA2
A
169 180Right-handed alpha
Helix 3
AA3
A
206 218Right-handed alpha
Helix 4
AA4
A
253 255Right-handed 310
Helix 5
AA5
A
256 267Right-handed alpha
Helix 6
AA6
A
275 299Right-handed alpha
Helix 7
AA7
B
156 169Right-handed alpha
Helix 8
AA8
B
169 179Right-handed alpha
Helix 9
AA9
B
206 218Right-handed alpha
Helix 10
AB1
B
253 255Right-handed 310
Helix 11
AB2
B
256 266Right-handed alpha
Helix 12
AB3
B
275 298Right-handed alpha
Helix 13
AB4
C
156 169Right-handed alpha
Helix 14
AB5
C
169 180Right-handed alpha
Helix 15
AB6
C
206 218Right-handed alpha
Helix 16
AB7
C
240 243Right-handed 310
Helix 17
AB8
C
253 255Right-handed 310
Helix 18
AB9
C
256 267Right-handed alpha
Helix 19
AC1
C
275 299Right-handed alpha
Helix 20
AC2
D
156 169Right-handed alpha
Helix 21
AC3
D
169 179Right-handed alpha
Helix 22
AC4
D
206 219Right-handed alpha
Helix 23
AC5
D
255 267Right-handed alpha
Helix 24
AC6
D
275 299Right-handed alpha
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There are 8 sheets in PDB entry 8HWJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
183 185first strand
Strand 2
A
188 190anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 225first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
246 251anti-parallel
Strand 4
A
192 199parallel
Strand 5
A
307 311parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
183 185first strand
Strand 2
B
188 190anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
221 226first strand
Strand 2
B
233 238anti-parallel
Strand 3
B
246 251anti-parallel
Strand 4
B
192 199parallel
Strand 5
B
307 311parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
183 185first strand
Strand 2
C
188 190anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
221 225first strand
Strand 2
C
234 238anti-parallel
Strand 3
C
246 251anti-parallel
Strand 4
C
192 199parallel
Strand 5
C
307 311parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
183 185first strand
Strand 2
D
188 190anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
221 224first strand
Strand 2
D
235 239anti-parallel
Strand 3
D
246 251anti-parallel
Strand 4
D
192 199parallel
Strand 5
D
307 311parallel
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