Analysis of interatomic Contacts of Structural Units in PDB entry:
8HWK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HWK entry

There are 2 chains in PDB entry 8HWK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 26	SER 852
B	GLY 26	SER 852

There are 68 helices in PDB entry 8HWK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	33	Right-handed 310
Helix 2	AA2	A	79	81	Right-handed 310
Helix 3	AA3	A	85	98	Right-handed alpha
Helix 4	AA4	A	103	107	Right-handed 310
Helix 5	AA5	A	109	114	Right-handed alpha
Helix 6	AA6	A	121	144	Right-handed alpha
Helix 7	AA7	A	146	160	Right-handed alpha
Helix 8	AA8	A	161	169	Right-handed 310
Helix 9	AA9	A	186	190	Right-handed 310
Helix 10	AB1	A	199	203	Right-handed 310
Helix 11	AB2	A	226	242	Right-handed alpha
Helix 12	AB3	A	242	247	Right-handed alpha
Helix 13	AB4	A	262	267	Right-handed 310
Helix 14	AB5	A	268	283	Right-handed alpha
Helix 15	AB6	A	287	293	Right-handed alpha
Helix 16	AB7	A	302	312	Right-handed alpha
Helix 17	AB8	A	321	330	Right-handed alpha
Helix 18	AB9	A	340	345	Right-handed alpha
Helix 19	AC1	A	368	384	Right-handed alpha
Helix 20	AC2	A	392	406	Right-handed alpha
Helix 21	AC3	A	415	426	Right-handed alpha
Helix 22	AC4	A	435	439	Right-handed alpha
Helix 23	AC5	A	452	467	Right-handed alpha
Helix 24	AC6	A	527	531	Right-handed 310
Helix 25	AC7	A	614	619	Right-handed alpha
Helix 26	AC8	A	635	638	Right-handed 310
Helix 27	AC9	A	639	647	Right-handed alpha
Helix 28	AD1	A	647	654	Right-handed alpha
Helix 29	AD2	A	696	710	Right-handed alpha
Helix 30	AD3	A	763	771	Right-handed alpha
Helix 31	AD4	A	774	782	Right-handed alpha
Helix 32	AD5	A	783	788	Right-handed alpha
Helix 33	AD6	A	807	809	Right-handed 310
Helix 34	AD7	A	848	852	Right-handed 310
Helix 35	AD8	B	28	33	Right-handed 310
Helix 36	AD9	B	79	81	Right-handed 310
Helix 37	AE1	B	85	98	Right-handed alpha
Helix 38	AE2	B	103	107	Right-handed 310
Helix 39	AE3	B	109	114	Right-handed alpha
Helix 40	AE4	B	121	144	Right-handed alpha
Helix 41	AE5	B	146	160	Right-handed alpha
Helix 42	AE6	B	161	169	Right-handed 310
Helix 43	AE7	B	186	190	Right-handed 310
Helix 44	AE8	B	199	203	Right-handed 310
Helix 45	AE9	B	226	242	Right-handed alpha
Helix 46	AF1	B	242	247	Right-handed alpha
Helix 47	AF2	B	262	267	Right-handed 310
Helix 48	AF3	B	268	283	Right-handed alpha
Helix 49	AF4	B	287	293	Right-handed alpha
Helix 50	AF5	B	302	312	Right-handed alpha
Helix 51	AF6	B	321	330	Right-handed alpha
Helix 52	AF7	B	340	345	Right-handed alpha
Helix 53	AF8	B	368	384	Right-handed alpha
Helix 54	AF9	B	392	406	Right-handed alpha
Helix 55	AG1	B	415	426	Right-handed alpha
Helix 56	AG2	B	435	439	Right-handed alpha
Helix 57	AG3	B	452	467	Right-handed alpha
Helix 58	AG4	B	527	531	Right-handed 310
Helix 59	AG5	B	614	619	Right-handed alpha
Helix 60	AG6	B	635	638	Right-handed 310
Helix 61	AG7	B	639	647	Right-handed alpha
Helix 62	AG8	B	647	654	Right-handed alpha
Helix 63	AG9	B	696	710	Right-handed alpha
Helix 64	AH1	B	763	771	Right-handed alpha
Helix 65	AH2	B	774	782	Right-handed alpha
Helix 66	AH3	B	783	788	Right-handed alpha
Helix 67	AH4	B	807	809	Right-handed 310
Helix 68	AH5	B	848	852	Right-handed 310

There are 16 sheets in PDB entry 8HWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	76	77	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	61	first strand
Strand 2	A	67	69	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	722	723	first strand
Strand 2	A	220	222	anti-parallel
Strand 3	A	811	815	anti-parallel
Strand 4	A	177	181	anti-parallel
Strand 5	A	728	737	anti-parallel
Strand 6	A	754	761	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	298	first strand
Strand 2	A	258	260	parallel
Strand 3	A	713	718	parallel
Strand 4	A	658	661	parallel
Strand 5	A	622	624	parallel
Strand 6	A	430	434	parallel
Strand 7	A	362	365	parallel
Strand 8	A	318	319	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	471	475	first strand
Strand 2	A	480	485	anti-parallel
Strand 3	A	507	512	anti-parallel
Strand 4	A	580	588	anti-parallel
Strand 5	A	534	541	anti-parallel
Strand 6	A	558	560	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	546	547	first strand
Strand 2	A	534	541	anti-parallel
Strand 3	A	580	588	anti-parallel
Strand 4	A	574	575	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	525	first strand
Strand 2	A	566	571	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	666	667	first strand
Strand 2	A	679	681	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	76	77	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	61	first strand
Strand 2	B	67	69	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	723	first strand
Strand 2	B	220	222	anti-parallel
Strand 3	B	811	815	anti-parallel
Strand 4	B	177	181	anti-parallel
Strand 5	B	728	737	anti-parallel
Strand 6	B	754	761	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	298	first strand
Strand 2	B	258	260	parallel
Strand 3	B	713	718	parallel
Strand 4	B	658	661	parallel
Strand 5	B	622	624	parallel
Strand 6	B	430	434	parallel
Strand 7	B	362	365	parallel
Strand 8	B	318	319	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	475	first strand
Strand 2	B	480	485	anti-parallel
Strand 3	B	507	512	anti-parallel
Strand 4	B	580	588	anti-parallel
Strand 5	B	534	541	anti-parallel
Strand 6	B	558	560	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	546	547	first strand
Strand 2	B	534	541	anti-parallel
Strand 3	B	580	588	anti-parallel
Strand 4	B	574	575	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	525	first strand
Strand 2	B	566	571	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	B	679	681	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HWK

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HWK