Analysis of interatomic Contacts of Structural Units in PDB entry:
8HX9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HX9 entry

There are 4 chains in PDB entry 8HX9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG -1	VAL 80
A	LEU 82	ASP 678
B	ARG -1	VAL 80
B	LEU 82	VAL 674

There are 38 helices in PDB entry 8HX9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	25	Right-handed alpha
Helix 2	AA2	A	41	45	Right-handed 310
Helix 3	AA3	A	70	74	Right-handed 310
Helix 4	AA4	A	114	118	Right-handed 310
Helix 5	AA5	A	176	194	Right-handed alpha
Helix 6	AA6	A	215	224	Right-handed alpha
Helix 7	AA7	A	283	295	Right-handed alpha
Helix 8	AA8	A	317	323	Right-handed 310
Helix 9	AA9	A	367	383	Right-handed alpha
Helix 10	AB1	A	397	402	Right-handed alpha
Helix 11	AB2	A	414	431	Right-handed alpha
Helix 12	AB3	A	450	462	Right-handed alpha
Helix 13	AB4	A	508	522	Right-handed alpha
Helix 14	AB5	A	522	542	Right-handed alpha
Helix 15	AB6	A	579	588	Right-handed alpha
Helix 16	AB7	A	590	593	Right-handed 310
Helix 17	AB8	A	597	610	Right-handed alpha
Helix 18	AB9	A	658	670	Right-handed alpha
Helix 19	AC1	A	670	678	Right-handed alpha
Helix 20	AC2	B	12	25	Right-handed alpha
Helix 21	AC3	B	56	66	Right-handed alpha
Helix 22	AC4	B	67	72	Right-handed alpha
Helix 23	AC5	B	83	91	Right-handed alpha
Helix 24	AC6	B	114	118	Right-handed 310
Helix 25	AC7	B	176	195	Right-handed alpha
Helix 26	AC8	B	215	224	Right-handed alpha
Helix 27	AC9	B	283	295	Right-handed alpha
Helix 28	AD1	B	317	323	Right-handed 310
Helix 29	AD2	B	367	386	Right-handed alpha
Helix 30	AD3	B	414	431	Right-handed alpha
Helix 31	AD4	B	450	462	Right-handed alpha
Helix 32	AD5	B	508	522	Right-handed alpha
Helix 33	AD6	B	522	544	Right-handed alpha
Helix 34	AD7	B	579	588	Right-handed alpha
Helix 35	AD8	B	590	593	Right-handed 310
Helix 36	AD9	B	597	610	Right-handed alpha
Helix 37	AE1	B	658	669	Right-handed alpha
Helix 38	AE2	B	670	678	Right-handed alpha

There are 11 sheets in PDB entry 8HX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	3	7	parallel
Strand 3	A	47	50	parallel
Strand 4	A	77	80	parallel
Strand 5	A	162	165	parallel
Strand 6	A	152	156	anti-parallel
Strand 7	A	142	147	anti-parallel
Strand 8	A	105	111	anti-parallel
Strand 9	A	124	128	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	210	first strand
Strand 2	A	353	361	anti-parallel
Strand 3	A	343	348	anti-parallel
Strand 4	A	245	250	anti-parallel
Strand 5	A	230	234	anti-parallel
Strand 6	A	466	471	anti-parallel
Strand 7	A	476	481	anti-parallel
Strand 8	A	637	641	anti-parallel
Strand 9	A	644	653	anti-parallel
Strand 10	A	436	446	anti-parallel
Strand 11	A	410	411	anti-parallel

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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	203	210	first strand
Strand 2	A	353	361	anti-parallel
Strand 3	A	343	348	anti-parallel
Strand 4	A	245	250	anti-parallel
Strand 5	A	230	234	anti-parallel
Strand 6	A	466	471	anti-parallel
Strand 7	A	476	481	anti-parallel
Strand 8	A	637	641	anti-parallel
Strand 9	A	644	653	anti-parallel
Strand 10	A	436	446	anti-parallel
Strand 11	A	595	596	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	336	341	anti-parallel
Strand 5	A	310	315	anti-parallel
Strand 6	A	619	624	anti-parallel
Strand 7	A	629	633	anti-parallel
Strand 8	A	484	488	anti-parallel
Strand 9	A	493	497	anti-parallel
Strand 10	A	563	573	anti-parallel
Strand 11	A	499	504	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	281	first strand
Strand 2	A	267	271	anti-parallel
Strand 3	A	257	262	anti-parallel
Strand 4	A	336	341	anti-parallel
Strand 5	A	310	315	anti-parallel
Strand 6	A	619	624	anti-parallel
Strand 7	A	629	633	anti-parallel
Strand 8	A	484	488	anti-parallel
Strand 9	A	493	497	anti-parallel
Strand 10	A	563	573	anti-parallel
Strand 11	A	550	560	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	2	7	parallel
Strand 3	B	45	50	parallel
Strand 4	B	77	80	parallel
Strand 5	B	162	165	parallel
Strand 6	B	152	157	anti-parallel
Strand 7	B	141	146	anti-parallel
Strand 8	B	105	111	anti-parallel
Strand 9	B	124	128	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	132	133	anti-parallel

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There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	210	first strand
Strand 2	B	353	361	anti-parallel
Strand 3	B	343	348	anti-parallel
Strand 4	B	245	250	anti-parallel
Strand 5	B	230	234	anti-parallel
Strand 6	B	466	471	anti-parallel
Strand 7	B	476	481	anti-parallel
Strand 8	B	637	641	anti-parallel
Strand 9	B	644	653	anti-parallel
Strand 10	B	436	446	anti-parallel
Strand 11	B	410	411	anti-parallel

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There are 11 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	210	first strand
Strand 2	B	353	361	anti-parallel
Strand 3	B	343	348	anti-parallel
Strand 4	B	245	250	anti-parallel
Strand 5	B	230	234	anti-parallel
Strand 6	B	466	471	anti-parallel
Strand 7	B	476	481	anti-parallel
Strand 8	B	637	641	anti-parallel
Strand 9	B	644	653	anti-parallel
Strand 10	B	436	446	anti-parallel
Strand 11	B	595	596	anti-parallel

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There are 11 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	257	262	anti-parallel
Strand 4	B	336	341	anti-parallel
Strand 5	B	310	315	anti-parallel
Strand 6	B	619	624	anti-parallel
Strand 7	B	629	633	anti-parallel
Strand 8	B	484	488	anti-parallel
Strand 9	B	493	496	anti-parallel
Strand 10	B	563	573	anti-parallel
Strand 11	B	499	504	anti-parallel

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There are 11 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	280	first strand
Strand 2	B	267	271	anti-parallel
Strand 3	B	257	262	anti-parallel
Strand 4	B	336	341	anti-parallel
Strand 5	B	310	315	anti-parallel
Strand 6	B	619	624	anti-parallel
Strand 7	B	629	633	anti-parallel
Strand 8	B	484	488	anti-parallel
Strand 9	B	493	496	anti-parallel
Strand 10	B	563	573	anti-parallel
Strand 11	B	550	559	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HX9

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HX9