Analysis of interatomic Contacts of Structural Units in PDB entry:
8HXK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HXK entry

There are 2 chains in PDB entry 8HXK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ASP 615
B
 GLN 15SER 690
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 8HXK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
56 79Right-handed alpha
Helix 3
AA3
A
90 101Right-handed alpha
Helix 4
AA4
A
109 128Right-handed alpha
Helix 5
AA5
A
158 193Right-handed alpha
Helix 6
AA6
A
198 205Right-handed alpha
Helix 7
AA7
A
218 232Right-handed alpha
Helix 8
AA8
A
233 252Right-handed alpha
Helix 9
AA9
A
265 267Right-handed 310
Helix 10
AB1
A
269 273Right-handed 310
Helix 11
AB2
A
278 283Right-handed alpha
Helix 12
AB3
A
293 300Right-handed alpha
Helix 13
AB4
A
303 319Right-handed alpha
Helix 14
AB5
A
324 330Right-handed alpha
Helix 15
AB6
A
365 385Right-handed alpha
Helix 16
AB7
A
399 413Right-handed alpha
Helix 17
AB8
A
414 421Right-handed alpha
Helix 18
AB9
A
431 448Right-handed alpha
Helix 19
AC1
A
449 466Right-handed alpha
Helix 20
AC2
A
469 471Right-handed 310
Helix 21
AC3
A
472 481Right-handed alpha
Helix 22
AC4
A
498 502Right-handed 310
Helix 23
AC5
A
503 508Right-handed alpha
Helix 24
AC6
A
512 532Right-handed alpha
Helix 25
AC7
A
547 561Right-handed alpha
Helix 26
AC8
A
565 574Right-handed alpha
Helix 27
AC9
A
581 597Right-handed alpha
Helix 28
AD1
B
290 300Right-handed alpha
Helix 29
AD2
B
334 339Right-handed alpha
Helix 30
AD3
B
399 406Right-handed alpha
Helix 31
AD4
B
498 502Right-handed 310
Helix 32
AD5
B
612 616Right-handed 310
Helix 33
AD6
B
627 632Right-handed alpha
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There are 14 sheets in PDB entry 8HXK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
142 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 31first strand
Strand 2
B
62 68anti-parallel
Strand 3
B
259 265anti-parallel
Strand 4
B
90 92anti-parallel
Strand 5
B
191 193anti-parallel
Strand 6
B
203 204anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 56first strand
Strand 2
B
267 272anti-parallel
Strand 3
B
285 286anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 85first strand
Strand 2
B
236 237anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 129first strand
Strand 2
B
168 170anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 196first strand
Strand 2
B
199 200anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 323first strand
Strand 2
B
534 539parallel
Strand 3
B
544 549anti-parallel
Strand 4
B
579 584anti-parallel
Strand 5
B
571 574anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
357 358first strand
Strand 2
B
520 521parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 392first strand
Strand 2
B
510 512anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 398first strand
Strand 2
B
504 507anti-parallel
Strand 3
B
430 433anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 450first strand
Strand 2
B
488 490anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
607 609first strand
Strand 2
B
644 647anti-parallel
Strand 3
B
638 641anti-parallel
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