Analysis of interatomic Contacts of Structural Units in PDB entry:
8HXW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HXW entry

There are 2 chains in PDB entry 8HXW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 32ARG 262
B
 GLU 32ARG 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 8HXW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
88 103Right-handed alpha
Helix 3
AA3
A
116 121Right-handed alpha
Helix 4
AA4
A
122 130Right-handed alpha
Helix 5
AA5
A
136 147Right-handed alpha
Helix 6
AA6
A
189 191Right-handed 310
Helix 7
AA7
A
198 200Right-handed 310
Helix 8
AA8
A
218 230Right-handed alpha
Helix 9
AA9
A
246 262Right-handed alpha
Helix 10
AB1
B
35 39Right-handed 310
Helix 11
AB2
B
88 103Right-handed alpha
Helix 12
AB3
B
116 121Right-handed alpha
Helix 13
AB4
B
122 130Right-handed alpha
Helix 14
AB5
B
136 146Right-handed alpha
Helix 15
AB6
B
189 191Right-handed 310
Helix 16
AB7
B
198 200Right-handed 310
Helix 17
AB8
B
217 230Right-handed alpha
Helix 18
AB9
B
246 261Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8HXW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
53 62anti-parallel
Strand 3
A
65 76anti-parallel
Strand 4
A
79 83anti-parallel
Strand 5
A
107 111parallel
Strand 6
A
132 135parallel
Strand 7
A
153 154parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 167first strand
Strand 2
A
170 174anti-parallel
Strand 3
A
185 188anti-parallel
Strand 4
A
193 197anti-parallel
Strand 5
A
235 238parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 50first strand
Strand 2
B
53 62anti-parallel
Strand 3
B
65 76anti-parallel
Strand 4
B
79 83anti-parallel
Strand 5
B
107 111parallel
Strand 6
B
132 135parallel
Strand 7
B
153 154parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
170 173anti-parallel
Strand 3
B
185 187anti-parallel
Strand 4
B
193 197anti-parallel
Strand 5
B
235 238parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il