Analysis of interatomic Contacts of Structural Units in PDB entry:
8HXX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HXX entry

There are 7 chains in PDB entry 8HXX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
K	SER 661	LEU 1322
L	MET 1	LYS 384
M	LYS 219	MET 401
N	LYS 82	SER 579
O	SER 221	ASP 376
P	GLU 258	ASN 580
E	ALA 1	ALA 25

There are 77 helices in PDB entry 8HXX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	K	662	677	Right-handed alpha
Helix 2	AA2	K	678	694	Right-handed alpha
Helix 3	AA3	K	698	710	Right-handed alpha
Helix 4	AA4	K	713	725	Right-handed alpha
Helix 5	AA5	K	759	764	Right-handed alpha
Helix 6	AA6	K	771	778	Right-handed alpha
Helix 7	AA7	K	785	790	Right-handed alpha
Helix 8	AA8	K	801	840	Right-handed alpha
Helix 9	AA9	K	861	871	Right-handed alpha
Helix 10	AB1	K	872	886	Right-handed alpha
Helix 11	AB2	K	886	929	Right-handed alpha
Helix 12	AB3	K	934	943	Right-handed alpha
Helix 13	AB4	K	944	964	Right-handed alpha
Helix 14	AB5	K	982	999	Right-handed alpha
Helix 15	AB6	K	1003	1022	Right-handed alpha
Helix 16	AB7	K	1025	1032	Right-handed alpha
Helix 17	AB8	K	1141	1164	Right-handed alpha
Helix 18	AB9	K	1164	1174	Right-handed alpha
Helix 19	AC1	K	1178	1184	Right-handed alpha
Helix 20	AC2	K	1202	1216	Right-handed alpha
Helix 21	AC3	K	1220	1233	Right-handed alpha
Helix 22	AC4	K	1236	1240	Right-handed 310
Helix 23	AC5	K	1241	1258	Right-handed alpha
Helix 24	AC6	K	1262	1275	Right-handed alpha
Helix 25	AC7	K	1280	1294	Right-handed alpha
Helix 26	AC8	L	26	32	Right-handed 310
Helix 27	AC9	L	42	55	Right-handed alpha
Helix 28	AD1	L	56	61	Right-handed 310
Helix 29	AD2	L	70	75	Right-handed alpha
Helix 30	AD3	L	79	89	Right-handed alpha
Helix 31	AD4	L	91	95	Right-handed 310
Helix 32	AD5	L	98	104	Right-handed alpha
Helix 33	AD6	L	115	136	Right-handed alpha
Helix 34	AD7	L	164	175	Right-handed alpha
Helix 35	AD8	L	190	197	Right-handed alpha
Helix 36	AD9	L	226	230	Right-handed 310
Helix 37	AE1	L	243	263	Right-handed alpha
Helix 38	AE2	L	272	276	Right-handed 310
Helix 39	AE3	L	287	300	Right-handed alpha
Helix 40	AE4	L	314	329	Right-handed alpha
Helix 41	AE5	L	343	348	Right-handed 310
Helix 42	AE6	L	365	380	Right-handed alpha
Helix 43	AE7	L	381	383	Right-handed 310
Helix 44	AE8	M	225	241	Right-handed alpha
Helix 45	AE9	M	253	269	Right-handed alpha
Helix 46	AF1	M	271	297	Right-handed alpha
Helix 47	AF2	M	302	316	Right-handed alpha
Helix 48	AF3	M	321	326	Right-handed alpha
Helix 49	AF4	M	327	344	Right-handed alpha
Helix 50	AF5	M	348	369	Right-handed alpha
Helix 51	AF6	M	369	374	Right-handed alpha
Helix 52	AF7	M	391	399	Right-handed alpha
Helix 53	AF8	N	100	104	Right-handed 310
Helix 54	AF9	N	120	128	Right-handed alpha
Helix 55	AG1	N	171	176	Right-handed alpha
Helix 56	AG2	N	303	315	Right-handed alpha
Helix 57	AG3	N	318	330	Right-handed alpha
Helix 58	AG4	N	336	343	Right-handed alpha
Helix 59	AG5	N	354	359	Right-handed alpha
Helix 60	AG6	N	382	388	Right-handed alpha
Helix 61	AG7	N	430	434	Right-handed 310
Helix 62	AG8	N	546	577	Right-handed alpha
Helix 63	AG9	O	225	241	Right-handed alpha
Helix 64	AH1	O	253	269	Right-handed alpha
Helix 65	AH2	O	271	293	Right-handed alpha
Helix 66	AH3	O	302	314	Right-handed alpha
Helix 67	AH4	O	328	343	Right-handed alpha
Helix 68	AH5	O	349	369	Right-handed alpha
Helix 69	AH6	O	369	374	Right-handed alpha
Helix 70	AH7	P	303	313	Right-handed alpha
Helix 71	AH8	P	315	330	Right-handed alpha
Helix 72	AH9	P	331	335	Right-handed 310
Helix 73	AI1	P	336	345	Right-handed alpha
Helix 74	AI2	P	354	359	Right-handed alpha
Helix 75	AI3	P	533	538	Right-handed 310
Helix 76	AI4	P	543	580	Right-handed alpha
Helix 77	AI5	E	18	22	Right-handed 310

There are 11 sheets in PDB entry 8HXX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	756	757	first strand
Strand 2	K	782	783	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	975	978	first strand
Strand 2	K	1311	1316	anti-parallel
Strand 3	K	1301	1306	anti-parallel
Strand 4	K	1135	1140	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	1129	1130	first strand
Strand 2	K	1278	1279	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	233	238	first strand
Strand 2	L	203	210	parallel
Strand 3	L	180	184	parallel
Strand 4	L	266	271	parallel
Strand 5	L	305	309	parallel
Strand 6	L	141	144	parallel
Strand 7	L	21	24	parallel
Strand 8	L	62	66	parallel
Strand 9	N	177	179	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	244	246	first strand
Strand 2	M	387	389	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	85	87	first strand
Strand 2	N	93	96	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	281	283	first strand
Strand 2	N	271	274	anti-parallel
Strand 3	E	3	5	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	365	366	first strand
Strand 2	N	372	373	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	N	446	448	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	473	477	first strand
Strand 2	N	489	493	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	505	506	first strand
Strand 2	P	539	542	parallel
Strand 3	N	520	522	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HXX

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HXX