Analysis of interatomic Contacts of Structural Units in PDB entry:
8HY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HY0 entry

There are 17 chains in PDB entry 8HY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 33	VAL 35
A	LYS 37	ARG 134
B	LEU 22	GLY 101
C	ARG 11	LYS 119
D	ARG 26	ALA 121
E	ALA 1	ARG 134
F	ASP 24	GLY 102
G	LYS 13	LYS 118
H	THR 29	LYS 122
I	C 164	T 333
J	A 11	G 180
K	SER 661	LEU 1322
L	MET 1	LYS 384
M	GLU 7	MET 401
N	LYS 82	SER 579
O	SER 221	ASP 376
P	GLU 258	ASN 580

There are111 helices in PDB entry 8HY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	55	Right-handed alpha
Helix 2	AA2	A	63	76	Right-handed alpha
Helix 3	AA3	A	87	114	Right-handed alpha
Helix 4	AA4	A	120	129	Right-handed alpha
Helix 5	AA5	B	25	29	Right-handed 310
Helix 6	AA6	B	30	41	Right-handed alpha
Helix 7	AA7	B	50	76	Right-handed alpha
Helix 8	AA8	B	82	94	Right-handed alpha
Helix 9	AA9	C	27	37	Right-handed alpha
Helix 10	AB1	C	45	72	Right-handed alpha
Helix 11	AB2	C	79	90	Right-handed alpha
Helix 12	AB3	C	91	96	Right-handed alpha
Helix 13	AB4	D	34	44	Right-handed alpha
Helix 14	AB5	D	52	81	Right-handed alpha
Helix 15	AB6	D	88	99	Right-handed alpha
Helix 16	AB7	D	101	121	Right-handed alpha
Helix 17	AB8	E	44	57	Right-handed alpha
Helix 18	AB9	E	63	76	Right-handed alpha
Helix 19	AC1	E	85	113	Right-handed alpha
Helix 20	AC2	E	120	132	Right-handed alpha
Helix 21	AC3	F	25	29	Right-handed 310
Helix 22	AC4	F	30	41	Right-handed alpha
Helix 23	AC5	F	50	74	Right-handed alpha
Helix 24	AC6	F	82	94	Right-handed alpha
Helix 25	AC7	G	16	22	Right-handed alpha
Helix 26	AC8	G	28	37	Right-handed alpha
Helix 27	AC9	G	45	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	92	97	Right-handed alpha
Helix 30	AD3	G	112	116	Right-handed 310
Helix 31	AD4	H	34	46	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	101	121	Right-handed alpha
Helix 35	AD8	K	662	677	Right-handed alpha
Helix 36	AD9	K	678	694	Right-handed alpha
Helix 37	AE1	K	698	710	Right-handed alpha
Helix 38	AE2	K	715	725	Right-handed alpha
Helix 39	AE3	K	759	764	Right-handed alpha
Helix 40	AE4	K	771	778	Right-handed alpha
Helix 41	AE5	K	785	790	Right-handed alpha
Helix 42	AE6	K	801	840	Right-handed alpha
Helix 43	AE7	K	852	857	Right-handed 310
Helix 44	AE8	K	861	871	Right-handed alpha
Helix 45	AE9	K	872	886	Right-handed alpha
Helix 46	AF1	K	886	928	Right-handed alpha
Helix 47	AF2	K	934	943	Right-handed alpha
Helix 48	AF3	K	944	964	Right-handed alpha
Helix 49	AF4	K	982	999	Right-handed alpha
Helix 50	AF5	K	1003	1022	Right-handed alpha
Helix 51	AF6	K	1025	1033	Right-handed alpha
Helix 52	AF7	K	1141	1164	Right-handed alpha
Helix 53	AF8	K	1164	1174	Right-handed alpha
Helix 54	AF9	K	1178	1184	Right-handed alpha
Helix 55	AG1	K	1202	1216	Right-handed alpha
Helix 56	AG2	K	1220	1233	Right-handed alpha
Helix 57	AG3	K	1236	1240	Right-handed 310
Helix 58	AG4	K	1241	1258	Right-handed alpha
Helix 59	AG5	K	1262	1275	Right-handed alpha
Helix 60	AG6	K	1279	1292	Right-handed alpha
Helix 61	AG7	L	28	32	Right-handed 310
Helix 62	AG8	L	42	55	Right-handed alpha
Helix 63	AG9	L	56	61	Right-handed 310
Helix 64	AH1	L	70	75	Right-handed alpha
Helix 65	AH2	L	79	89	Right-handed alpha
Helix 66	AH3	L	91	95	Right-handed 310
Helix 67	AH4	L	98	104	Right-handed alpha
Helix 68	AH5	L	115	136	Right-handed alpha
Helix 69	AH6	L	164	175	Right-handed alpha
Helix 70	AH7	L	190	197	Right-handed alpha
Helix 71	AH8	L	226	230	Right-handed 310
Helix 72	AH9	L	243	263	Right-handed alpha
Helix 73	AI1	L	272	276	Right-handed 310
Helix 74	AI2	L	287	300	Right-handed alpha
Helix 75	AI3	L	314	329	Right-handed alpha
Helix 76	AI4	L	343	347	Right-handed 310
Helix 77	AI5	L	365	380	Right-handed alpha
Helix 78	AI6	L	381	383	Right-handed 310
Helix 79	AI7	M	85	89	Right-handed 310
Helix 80	AI8	M	101	131	Right-handed alpha
Helix 81	AI9	M	225	241	Right-handed alpha
Helix 82	AJ1	M	254	266	Right-handed alpha
Helix 83	AJ2	M	271	297	Right-handed alpha
Helix 84	AJ3	M	301	316	Right-handed alpha
Helix 85	AJ4	M	327	344	Right-handed alpha
Helix 86	AJ5	M	348	369	Right-handed alpha
Helix 87	AJ6	M	369	374	Right-handed alpha
Helix 88	AJ7	M	391	401	Right-handed alpha
Helix 89	AJ8	N	100	104	Right-handed 310
Helix 90	AJ9	N	120	128	Right-handed alpha
Helix 91	AK1	N	171	175	Right-handed alpha
Helix 92	AK2	N	303	315	Right-handed alpha
Helix 93	AK3	N	318	330	Right-handed alpha
Helix 94	AK4	N	336	343	Right-handed alpha
Helix 95	AK5	N	354	359	Right-handed alpha
Helix 96	AK6	N	382	387	Right-handed alpha
Helix 97	AK7	N	430	434	Right-handed 310
Helix 98	AK8	N	546	578	Right-handed alpha
Helix 99	AK9	O	225	241	Right-handed alpha
Helix 100	AL1	O	253	269	Right-handed alpha
Helix 101	AL2	O	271	293	Right-handed alpha
Helix 102	AL3	O	302	314	Right-handed alpha
Helix 103	AL4	O	327	343	Right-handed alpha
Helix 104	AL5	O	349	369	Right-handed alpha
Helix 105	AL6	O	369	374	Right-handed alpha
Helix 106	AL7	P	303	313	Right-handed alpha
Helix 107	AL8	P	315	330	Right-handed alpha
Helix 108	AL9	P	333	337	Right-handed 310
Helix 109	AM1	P	338	345	Right-handed alpha
Helix 110	AM2	P	354	359	Right-handed alpha
Helix 111	AM3	P	544	580	Right-handed alpha

There are 20 sheets in PDB entry 8HY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	5	first strand
Strand 2	N	271	274	anti-parallel
Strand 3	N	281	283	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	756	757	first strand
Strand 2	K	782	783	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	975	978	first strand
Strand 2	K	1311	1316	anti-parallel
Strand 3	K	1301	1306	anti-parallel
Strand 4	K	1135	1140	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	233	238	first strand
Strand 2	L	203	210	parallel
Strand 3	L	180	184	parallel
Strand 4	L	266	271	parallel
Strand 5	L	305	309	parallel
Strand 6	L	141	144	parallel
Strand 7	L	21	24	parallel
Strand 8	L	62	66	parallel
Strand 9	N	176	179	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	59	first strand
Strand 2	M	37	40	anti-parallel
Strand 3	M	21	32	anti-parallel
Strand 4	M	77	81	anti-parallel
Strand 5	M	90	92	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	58	59	first strand
Strand 2	M	37	40	anti-parallel
Strand 3	M	21	32	anti-parallel
Strand 4	M	13	18	anti-parallel
Strand 5	M	97	99	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	244	246	first strand
Strand 2	M	387	389	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	85	87	first strand
Strand 2	N	93	96	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	365	366	first strand
Strand 2	N	372	373	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	N	446	448	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	473	477	first strand
Strand 2	N	489	493	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	505	506	first strand
Strand 2	P	539	543	parallel
Strand 3	N	520	523	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	273	274	first strand
Strand 2	P	281	282	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HY0