Analysis of interatomic Contacts of Structural Units in PDB entry:
8HYC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HYC entry

There are 2 chains in PDB entry 8HYC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 30ARG 270
B
 GLU 30ARG 270
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8HYC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
94 109Right-handed alpha
Helix 2
AA2
A
122 127Right-handed alpha
Helix 3
AA3
A
128 135Right-handed alpha
Helix 4
AA4
A
143 149Right-handed alpha
Helix 5
AA5
A
150 153Right-handed 310
Helix 6
AA6
A
170 174Right-handed 310
Helix 7
AA7
A
228 240Right-handed alpha
Helix 8
AA8
A
256 268Right-handed alpha
Helix 9
AA9
B
94 109Right-handed alpha
Helix 10
AB1
B
122 127Right-handed alpha
Helix 11
AB2
B
128 135Right-handed alpha
Helix 12
AB3
B
143 149Right-handed alpha
Helix 13
AB4
B
150 153Right-handed 310
Helix 14
AB5
B
170 174Right-handed 310
Helix 15
AB6
B
207 210Right-handed 310
Helix 16
AB7
B
228 240Right-handed alpha
Helix 17
AB8
B
256 268Right-handed alpha
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There are 4 sheets in PDB entry 8HYC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 46first strand
Strand 2
A
49 55anti-parallel
Strand 3
A
58 67anti-parallel
Strand 4
A
71 82anti-parallel
Strand 5
A
85 89anti-parallel
Strand 6
A
113 118parallel
Strand 7
A
138 142parallel
Strand 8
A
159 161parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 183first strand
Strand 2
A
195 198anti-parallel
Strand 3
A
203 205anti-parallel
Strand 4
A
245 248parallel
Strand 5
A
251 254anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 46first strand
Strand 2
B
49 55anti-parallel
Strand 3
B
58 67anti-parallel
Strand 4
B
71 82anti-parallel
Strand 5
B
85 89anti-parallel
Strand 6
B
113 117parallel
Strand 7
B
138 142parallel
Strand 8
B
159 161parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
180 183first strand
Strand 2
B
195 198anti-parallel
Strand 3
B
203 205anti-parallel
Strand 4
B
245 247parallel
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