Analysis of interatomic Contacts of Structural Units in PDB entry:
8HYJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HYJ entry

There are 16 chains in PDB entry 8HYJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 16	THR 1236
B	ASN 22	LEU 1171
C	THR 5	ASP 300
D	LEU 85	LEU 201
E	LEU 14	TRP 222
F	ARG 59	GLU 134
G	MET 1	GLU 178
H	ILE 5	LEU 146
I	SER 2	GLU 114
J	MET 1	TYR 62
K	GLU 14	SER 113
L	THR 9	ALA 50
N	A -14	G 22
P	A 1	U 10
T	C -22	T 14
W	THR 607	GLU 656

There are113 helices in PDB entry 8HYJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	39	45	Right-handed 310
Helix 3	AA3	A	83	85	Right-handed 310
Helix 4	AA4	A	86	97	Right-handed alpha
Helix 5	AA5	A	157	164	Right-handed alpha
Helix 6	AA6	A	176	186	Right-handed alpha
Helix 7	AA7	A	188	199	Right-handed alpha
Helix 8	AA8	A	215	219	Right-handed 310
Helix 9	AA9	A	235	252	Right-handed alpha
Helix 10	AB1	A	258	263	Right-handed alpha
Helix 11	AB2	A	266	275	Right-handed alpha
Helix 12	AB3	A	342	349	Right-handed alpha
Helix 13	AB4	A	359	368	Right-handed alpha
Helix 14	AB5	A	419	423	Right-handed 310
Helix 15	AB6	A	439	443	Right-handed 310
Helix 16	AB7	A	462	472	Right-handed alpha
Helix 17	AB8	A	492	504	Right-handed alpha
Helix 18	AB9	A	509	519	Right-handed alpha
Helix 19	AC1	A	540	549	Right-handed alpha
Helix 20	AC2	A	575	592	Right-handed alpha
Helix 21	AC3	A	593	616	Right-handed alpha
Helix 22	AC4	A	627	642	Right-handed alpha
Helix 23	AC5	A	643	648	Right-handed 310
Helix 24	AC6	A	653	675	Right-handed alpha
Helix 25	AC7	A	678	684	Right-handed alpha
Helix 26	AC8	A	688	697	Right-handed alpha
Helix 27	AC9	A	715	720	Right-handed alpha
Helix 28	AD1	A	721	730	Right-handed alpha
Helix 29	AD2	A	750	784	Right-handed alpha
Helix 30	AD3	A	828	846	Right-handed alpha
Helix 31	AD4	A	848	862	Right-handed alpha
Helix 32	AD5	A	871	876	Right-handed alpha
Helix 33	AD6	A	890	901	Right-handed alpha
Helix 34	AD7	A	907	912	Right-handed alpha
Helix 35	AD8	A	951	967	Right-handed alpha
Helix 36	AD9	A	978	982	Right-handed 310
Helix 37	AE1	A	1014	1033	Right-handed alpha
Helix 38	AE2	A	1086	1095	Right-handed alpha
Helix 39	AE3	A	1114	1119	Right-handed alpha
Helix 40	AE4	A	1120	1140	Right-handed alpha
Helix 41	AE5	A	1144	1156	Right-handed alpha
Helix 42	AE6	A	1165	1176	Right-handed alpha
Helix 43	AE7	A	1180	1188	Right-handed alpha
Helix 44	AE8	A	1189	1201	Right-handed alpha
Helix 45	AE9	A	1208	1213	Right-handed alpha
Helix 46	AF1	A	1221	1225	Right-handed 310
Helix 47	AF2	B	23	27	Right-handed 310
Helix 48	AF3	B	29	46	Right-handed alpha
Helix 49	AF4	B	49	60	Right-handed alpha
Helix 50	AF5	B	64	70	Right-handed alpha
Helix 51	AF6	B	117	125	Right-handed alpha
Helix 52	AF7	B	243	247	Right-handed 310
Helix 53	AF8	B	279	286	Right-handed alpha
Helix 54	AF9	B	290	298	Right-handed alpha
Helix 55	AG1	B	304	321	Right-handed alpha
Helix 56	AG2	B	329	341	Right-handed alpha
Helix 57	AG3	B	349	357	Right-handed alpha
Helix 58	AG4	B	364	384	Right-handed alpha
Helix 59	AG5	B	394	396	Right-handed 310
Helix 60	AG6	B	404	431	Right-handed alpha
Helix 61	AG7	B	438	443	Right-handed alpha
Helix 62	AG8	B	445	459	Right-handed alpha
Helix 63	AG9	B	482	490	Right-handed alpha
Helix 64	AH1	B	548	555	Right-handed alpha
Helix 65	AH2	B	586	599	Right-handed alpha
Helix 66	AH3	B	634	640	Right-handed alpha
Helix 67	AH4	B	649	656	Right-handed alpha
Helix 68	AH5	B	664	670	Right-handed alpha
Helix 69	AH6	B	675	682	Right-handed alpha
Helix 70	AH7	B	692	697	Right-handed 310
Helix 71	AH8	B	706	710	Right-handed 310
Helix 72	AH9	B	711	721	Right-handed alpha
Helix 73	AI1	B	755	762	Right-handed alpha
Helix 74	AI2	B	949	954	Right-handed alpha
Helix 75	AI3	B	956	971	Right-handed alpha
Helix 76	AI4	B	996	1008	Right-handed alpha
Helix 77	AI5	B	1043	1048	Right-handed alpha
Helix 78	AI6	B	1076	1087	Right-handed alpha
Helix 79	AI7	B	1089	1098	Right-handed alpha
Helix 80	AI8	B	1148	1162	Right-handed alpha
Helix 81	AI9	C	30	44	Right-handed alpha
Helix 82	AJ1	C	63	65	Right-handed 310
Helix 83	AJ2	C	66	73	Right-handed alpha
Helix 84	AJ3	C	78	84	Right-handed 310
Helix 85	AJ4	C	177	181	Right-handed 310
Helix 86	AJ5	C	199	204	Right-handed alpha
Helix 87	AJ6	C	205	210	Right-handed alpha
Helix 88	AJ7	C	211	216	Right-handed 310
Helix 89	AJ8	C	234	238	Right-handed 310
Helix 90	AJ9	C	242	252	Right-handed alpha
Helix 91	AK1	C	278	294	Right-handed alpha
Helix 92	AK2	D	95	114	Right-handed alpha
Helix 93	AK3	D	121	133	Right-handed alpha
Helix 94	AK4	D	138	152	Right-handed alpha
Helix 95	AK5	D	155	166	Right-handed alpha
Helix 96	AK6	D	169	177	Right-handed alpha
Helix 97	AK7	D	178	181	Right-handed 310
Helix 98	AK8	D	183	201	Right-handed alpha
Helix 99	AK9	E	22	42	Right-handed alpha
Helix 100	AL1	E	47	52	Right-handed alpha
Helix 101	AL2	E	54	63	Right-handed alpha
Helix 102	AL3	E	96	111	Right-handed alpha
Helix 103	AL4	E	125	132	Right-handed alpha
Helix 104	AL5	E	133	135	Right-handed 310
Helix 105	AL6	F	66	82	Right-handed alpha
Helix 106	AL7	F	96	106	Right-handed alpha
Helix 107	AL8	G	21	38	Right-handed alpha
Helix 108	AL9	J	17	26	Right-handed alpha
Helix 109	AM1	J	45	51	Right-handed alpha
Helix 110	AM2	J	56	62	Right-handed alpha
Helix 111	AM3	K	39	51	Right-handed alpha
Helix 112	AM4	K	82	113	Right-handed alpha
Helix 113	AM5	W	650	652	Right-handed 310

There are 39 sheets in PDB entry 8HYJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	18	21	first strand
Strand 2	B	1163	1166	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	139	143	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	323	325	first strand
Strand 2	B	1049	1051	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	328	330	first strand
Strand 2	A	436	438	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	338	341	first strand
Strand 2	A	425	430	parallel
Strand 3	A	409	413	anti-parallel
Strand 4	A	456	457	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	353	first strand
Strand 2	A	398	403	anti-parallel
Strand 3	A	374	377	anti-parallel
Strand 4	A	380	383	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	791	first strand
Strand 2	A	797	799	anti-parallel
Strand 3	A	805	807	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	877	879	first strand
Strand 2	A	1071	1074	anti-parallel
Strand 3	A	1047	1049	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1227	1228	first strand
Strand 2	F	114	118	anti-parallel
Strand 3	F	122	126	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	92	95	anti-parallel
Strand 3	B	139	141	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	129	134	anti-parallel
Strand 3	B	172	177	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	106	109	first strand
Strand 2	B	112	115	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	209	first strand
Strand 2	B	214	217	anti-parallel
Strand 3	B	475	477	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	401	first strand
Strand 2	B	219	223	anti-parallel
Strand 3	B	492	494	parallel
Strand 4	B	532	533	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	236	239	first strand
Strand 2	B	248	253	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	278	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	579	584	first strand
Strand 2	B	572	576	anti-parallel
Strand 3	B	617	621	parallel
Strand 4	B	608	612	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	663	first strand
Strand 2	B	628	633	anti-parallel
Strand 3	B	688	689	anti-parallel
Strand 4	B	672	673	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	745	first strand
Strand 2	B	802	812	anti-parallel
Strand 3	B	896	906	anti-parallel
Strand 4	B	881	890	anti-parallel
Strand 5	B	853	854	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	742	745	first strand
Strand 2	B	802	812	anti-parallel
Strand 3	B	896	906	anti-parallel
Strand 4	B	881	890	anti-parallel
Strand 5	L	36	39	anti-parallel
Strand 6	L	10	12	anti-parallel
Strand 7	L	18	19	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1015	first strand
Strand 2	B	1030	1039	anti-parallel
Strand 3	B	913	916	anti-parallel
Strand 4	B	921	928	anti-parallel
Strand 5	B	787	791	parallel
Strand 6	B	944	945	anti-parallel
Strand 7	B	770	776	parallel
Strand 8	B	1030	1039	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	859	861	first strand
Strand 2	B	873	874	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	1017	1018	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1114	1115	first strand
Strand 2	B	1105	1108	anti-parallel
Strand 3	B	1142	1145	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	16	17	first strand
Strand 2	C	21	23	anti-parallel
Strand 3	C	268	271	anti-parallel
Strand 4	C	187	188	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	111	first strand
Strand 2	C	162	172	anti-parallel
Strand 3	C	47	55	anti-parallel
Strand 4	L	46	48	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	118	119	first strand
Strand 2	C	156	157	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	192	196	first strand
Strand 2	C	257	261	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	88	first strand
Strand 2	E	117	118	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	160	162	first strand
Strand 2	E	202	205	anti-parallel
Strand 3	E	219	221	anti-parallel
Strand 4	E	184	185	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	13	first strand
Strand 2	G	70	81	anti-parallel
Strand 3	G	48	57	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	13	first strand
Strand 2	G	70	81	anti-parallel
Strand 3	G	62	63	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	89	96	first strand
Strand 2	G	100	105	anti-parallel
Strand 3	G	108	114	anti-parallel
Strand 4	G	160	166	parallel
Strand 5	G	144	155	anti-parallel
Strand 6	G	89	96	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	122	124	first strand
Strand 2	G	130	132	anti-parallel

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There are 9 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	17	first strand
Strand 2	H	28	34	anti-parallel
Strand 3	H	40	45	anti-parallel
Strand 4	H	119	123	anti-parallel
Strand 5	H	112	116	anti-parallel
Strand 6	H	91	99	anti-parallel
Strand 7	H	138	144	anti-parallel
Strand 8	H	57	63	anti-parallel
Strand 9	H	8	17	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	19	first strand
Strand 2	I	24	29	anti-parallel
Strand 3	I	35	36	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	84	89	first strand
Strand 2	I	98	103	anti-parallel
Strand 3	I	112	113	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	19	23	first strand
Strand 2	K	30	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	625	626	first strand
Strand 2	W	614	616	anti-parallel
Strand 3	W	654	655	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	638	639	first strand
Strand 2	W	646	647	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HYJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HYJ