Analysis of interatomic Contacts of Structural Units in PDB entry:
8HYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8HYL entry

There are 4 chains in PDB entry 8HYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 170
B
 MET 1LYS 165
C
 GLU 4LYS 170
D
 MET 1LYS 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8HYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 35Right-handed 310
Helix 2
AA2
A
65 68Right-handed 310
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
124 129Right-handed 310
Helix 5
AA5
A
130 169Right-handed alpha
Helix 6
AA6
B
85 89Right-handed 310
Helix 7
AA7
B
120 124Right-handed 310
Helix 8
AA8
B
125 164Right-handed alpha
Helix 9
AA9
C
31 35Right-handed 310
Helix 10
AB1
C
65 68Right-handed 310
Helix 11
AB2
C
90 94Right-handed 310
Helix 12
AB3
C
122 127Right-handed alpha
Helix 13
AB4
C
130 168Right-handed alpha
Helix 14
AB5
D
120 124Right-handed 310
Helix 15
AB6
D
125 163Right-handed alpha
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There are 12 sheets in PDB entry 8HYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 9first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
81 86anti-parallel
Strand 4
A
71 76anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
113 117parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
36 42anti-parallel
Strand 5
A
48 54anti-parallel
Strand 6
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 15first strand
Strand 2
A
113 117parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
106 109anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
76 82anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
108 112parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
39 44anti-parallel
Strand 5
B
51 55anti-parallel
Strand 6
B
59 60anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 14first strand
Strand 2
B
108 112parallel
Strand 3
B
90 96anti-parallel
Strand 4
B
103 104anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
6 9first strand
Strand 2
C
21 28anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
71 76anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
113 117parallel
Strand 3
C
95 102anti-parallel
Strand 4
C
37 42anti-parallel
Strand 5
C
49 54anti-parallel
Strand 6
C
61 63anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 15first strand
Strand 2
C
113 117parallel
Strand 3
C
95 102anti-parallel
Strand 4
C
106 109anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 8first strand
Strand 2
D
19 26anti-parallel
Strand 3
D
76 82anti-parallel
Strand 4
D
68 73anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
108 111parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
39 44anti-parallel
Strand 5
D
51 55anti-parallel
Strand 6
D
59 60anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 13first strand
Strand 2
D
108 111parallel
Strand 3
D
90 96anti-parallel
Strand 4
D
103 104anti-parallel
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