Analysis of interatomic Contacts of Structural Units in PDB entry:
8HZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8HZ4 entry

There are 3 chains in PDB entry 8HZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 459
B	MET 1	ALA 459
C	MET 1	ILE 411

There are 78 helices in PDB entry 8HZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	24	Right-handed alpha
Helix 2	AA2	A	35	38	Right-handed 310
Helix 3	AA3	A	39	45	Right-handed alpha
Helix 4	AA4	A	55	59	Right-handed 310
Helix 5	AA5	A	62	74	Right-handed alpha
Helix 6	AA6	A	88	98	Right-handed alpha
Helix 7	AA7	A	106	113	Right-handed alpha
Helix 8	AA8	A	115	126	Right-handed alpha
Helix 9	AA9	A	140	152	Right-handed alpha
Helix 10	AB1	A	176	191	Right-handed alpha
Helix 11	AB2	A	248	267	Right-handed alpha
Helix 12	AB3	A	295	304	Right-handed alpha
Helix 13	AB4	A	306	316	Right-handed alpha
Helix 14	AB5	A	323	327	Right-handed 310
Helix 15	AB6	A	394	408	Right-handed alpha
Helix 16	AB7	A	417	427	Right-handed alpha
Helix 17	AB8	A	427	433	Right-handed alpha
Helix 18	AB9	A	438	443	Right-handed alpha
Helix 19	AC1	A	444	454	Right-handed alpha
Helix 20	AC2	B	10	24	Right-handed alpha
Helix 21	AC3	B	35	37	Right-handed 310
Helix 22	AC4	B	39	45	Right-handed alpha
Helix 23	AC5	B	55	59	Right-handed 310
Helix 24	AC6	B	62	74	Right-handed alpha
Helix 25	AC7	B	88	98	Right-handed alpha
Helix 26	AC8	B	106	113	Right-handed alpha
Helix 27	AC9	B	115	125	Right-handed alpha
Helix 28	AD1	B	126	128	Right-handed 310
Helix 29	AD2	B	140	152	Right-handed alpha
Helix 30	AD3	B	176	193	Right-handed alpha
Helix 31	AD4	B	248	267	Right-handed alpha
Helix 32	AD5	B	295	304	Right-handed alpha
Helix 33	AD6	B	306	316	Right-handed alpha
Helix 34	AD7	B	323	327	Right-handed 310
Helix 35	AD8	B	394	408	Right-handed alpha
Helix 36	AD9	B	417	425	Right-handed alpha
Helix 37	AE1	B	427	433	Right-handed alpha
Helix 38	AE2	B	438	443	Right-handed alpha
Helix 39	AE3	B	445	454	Right-handed alpha
Helix 40	AE4	C	10	24	Right-handed alpha
Helix 41	AE5	C	35	37	Right-handed 310
Helix 42	AE6	C	39	45	Right-handed alpha
Helix 43	AE7	C	55	59	Right-handed 310
Helix 44	AE8	C	62	74	Right-handed alpha
Helix 45	AE9	C	88	98	Right-handed alpha
Helix 46	AF1	C	106	113	Right-handed alpha
Helix 47	AF2	C	115	125	Right-handed alpha
Helix 48	AF3	C	140	152	Right-handed alpha
Helix 49	AF4	C	173	185	Right-handed alpha
Helix 50	AF5	C	248	267	Right-handed alpha
Helix 51	AF6	C	295	304	Right-handed alpha
Helix 52	AF7	C	306	317	Right-handed alpha
Helix 53	AF8	C	323	327	Right-handed 310
Helix 54	AF9	C	343	346	Right-handed 310
Helix 55	AG1	C	394	409	Right-handed alpha
Helix 56	AG2	C	417	427	Right-handed alpha
Helix 57	AG3	C	427	433	Right-handed alpha
Helix 58	AG4	C	438	443	Right-handed alpha
Helix 59	AG5	C	444	454	Right-handed alpha
Helix 60	AG6	D	10	24	Right-handed alpha
Helix 61	AG7	D	35	37	Right-handed 310
Helix 62	AG8	D	39	45	Right-handed alpha
Helix 63	AG9	D	55	59	Right-handed 310
Helix 64	AH1	D	62	74	Right-handed alpha
Helix 65	AH2	D	88	98	Right-handed alpha
Helix 66	AH3	D	106	113	Right-handed alpha
Helix 67	AH4	D	115	126	Right-handed alpha
Helix 68	AH5	D	140	152	Right-handed alpha
Helix 69	AH6	D	176	187	Right-handed alpha
Helix 70	AH7	D	248	267	Right-handed alpha
Helix 71	AH8	D	295	304	Right-handed alpha
Helix 72	AH9	D	306	317	Right-handed alpha
Helix 73	AI1	D	323	327	Right-handed 310
Helix 74	AI2	D	394	408	Right-handed alpha
Helix 75	AI3	D	417	427	Right-handed alpha
Helix 76	AI4	D	427	433	Right-handed alpha
Helix 77	AI5	D	438	443	Right-handed alpha
Helix 78	AI6	D	444	454	Right-handed alpha

There are 24 sheets in PDB entry 8HZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 15 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	77	79	parallel
Strand 3	A	4	7	parallel
Strand 4	A	27	33	parallel
Strand 5	A	47	52	parallel
Strand 6	H	479	486	anti-parallel
Strand 7	E	470	476	anti-parallel
Strand 8	E	479	486	anti-parallel
Strand 9	G	471	476	anti-parallel
Strand 10	G	479	484	anti-parallel
Strand 11	B	47	52	anti-parallel
Strand 12	B	27	33	parallel
Strand 13	B	4	7	parallel
Strand 14	B	77	79	parallel
Strand 15	B	101	102	parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	77	79	parallel
Strand 3	A	4	7	parallel
Strand 4	A	27	33	parallel
Strand 5	A	47	52	parallel
Strand 6	H	479	486	anti-parallel
Strand 7	H	471	476	anti-parallel
Strand 8	F	479	486	anti-parallel
Strand 9	F	470	476	anti-parallel
Strand 10	G	479	484	anti-parallel
Strand 11	B	47	52	anti-parallel
Strand 12	B	27	33	parallel
Strand 13	B	4	7	parallel
Strand 14	B	77	79	parallel
Strand 15	B	101	102	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	134	first strand
Strand 2	A	197	201	anti-parallel
Strand 3	A	155	159	anti-parallel
Strand 4	A	169	171	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	289	first strand
Strand 2	A	270	279	anti-parallel
Strand 3	A	207	215	anti-parallel
Strand 4	A	221	233	anti-parallel
Strand 5	A	236	242	anti-parallel
Strand 6	A	332	338	anti-parallel
Strand 7	A	386	392	anti-parallel
Strand 8	A	365	369	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	341	342	first strand
Strand 2	A	348	349	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	375	376	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	358	first strand
Strand 2	A	410	411	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	171	first strand
Strand 2	B	155	159	anti-parallel
Strand 3	B	197	201	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	228	first strand
Strand 2	B	207	215	anti-parallel
Strand 3	B	270	279	anti-parallel
Strand 4	B	282	289	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	232	233	first strand
Strand 2	B	236	237	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	242	first strand
Strand 2	B	332	339	anti-parallel
Strand 3	B	384	392	anti-parallel
Strand 4	B	365	369	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	354	first strand
Strand 2	B	375	376	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	358	first strand
Strand 2	B	410	411	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	52	first strand
Strand 2	C	27	33	parallel
Strand 3	C	4	7	parallel
Strand 4	C	77	79	parallel
Strand 5	C	101	102	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	171	first strand
Strand 2	C	155	157	anti-parallel
Strand 3	C	199	201	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	289	first strand
Strand 2	C	270	279	anti-parallel
Strand 3	C	207	215	anti-parallel
Strand 4	C	221	233	anti-parallel
Strand 5	C	236	242	anti-parallel
Strand 6	C	332	339	anti-parallel
Strand 7	C	384	392	anti-parallel
Strand 8	C	365	369	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	341	342	first strand
Strand 2	C	348	349	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	354	first strand
Strand 2	C	375	376	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	358	first strand
Strand 2	C	410	411	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	52	first strand
Strand 2	D	27	33	parallel
Strand 3	D	4	7	parallel
Strand 4	D	77	79	parallel
Strand 5	D	101	102	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	171	first strand
Strand 2	D	155	158	anti-parallel
Strand 3	D	198	201	anti-parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	289	first strand
Strand 2	D	271	279	anti-parallel
Strand 3	D	207	215	anti-parallel
Strand 4	D	221	233	anti-parallel
Strand 5	D	236	242	anti-parallel
Strand 6	D	332	339	anti-parallel
Strand 7	D	384	392	anti-parallel
Strand 8	D	365	369	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	353	354	first strand
Strand 2	D	375	376	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	357	358	first strand
Strand 2	D	410	411	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8HZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8HZ4