Analysis of interatomic Contacts of Structural Units in PDB entry:
8I04


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8I04 entry

There are 3 chains in PDB entry 8I04 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5GLY 262
B
 GLU 5ASN 261
C
 GLU 5ASN 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8I04. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 24Right-handed alpha
Helix 2
AA2
A
27 35Right-handed alpha
Helix 3
AA3
A
40 54Right-handed alpha
Helix 4
AA4
A
59 74Right-handed alpha
Helix 5
AA5
A
75 92Right-handed alpha
Helix 6
AA6
A
98 105Right-handed alpha
Helix 7
AA7
A
105 124Right-handed alpha
Helix 8
AA8
A
125 141Right-handed alpha
Helix 9
AA9
A
251 256Right-handed alpha
Helix 10
AB1
B
6 24Right-handed alpha
Helix 11
AB2
B
27 35Right-handed alpha
Helix 12
AB3
B
40 53Right-handed alpha
Helix 13
AB4
B
59 74Right-handed alpha
Helix 14
AB5
B
75 92Right-handed alpha
Helix 15
AB6
B
98 105Right-handed alpha
Helix 16
AB7
B
105 123Right-handed alpha
Helix 17
AB8
B
125 141Right-handed alpha
Helix 18
AB9
B
251 256Right-handed alpha
Helix 19
AC1
C
6 22Right-handed alpha
Helix 20
AC2
C
27 35Right-handed alpha
Helix 21
AC3
C
40 54Right-handed alpha
Helix 22
AC4
C
59 74Right-handed alpha
Helix 23
AC5
C
75 92Right-handed alpha
Helix 24
AC6
C
98 105Right-handed alpha
Helix 25
AC7
C
105 123Right-handed alpha
Helix 26
AC8
C
125 141Right-handed alpha
Helix 27
AC9
C
251 256Right-handed alpha
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There are 9 sheets in PDB entry 8I04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 144first strand
Strand 2
A
162 164parallel
Strand 3
A
181 183parallel
Strand 4
A
207 209parallel
Strand 5
A
225 226parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
169 170parallel
Strand 3
A
195 196parallel
Strand 4
A
213 214parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 156first strand
Strand 2
A
175 176parallel
Strand 3
A
201 202parallel
Strand 4
A
219 220parallel
Strand 5
A
235 237parallel
Strand 6
A
242 245anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 144first strand
Strand 2
B
162 164parallel
Strand 3
B
181 183parallel
Strand 4
B
207 209parallel
Strand 5
B
225 226parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
169 170parallel
Strand 3
B
195 196parallel
Strand 4
B
213 214parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 156first strand
Strand 2
B
175 176parallel
Strand 3
B
201 202parallel
Strand 4
B
219 220parallel
Strand 5
B
235 237parallel
Strand 6
B
242 245anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
142 144first strand
Strand 2
C
162 164parallel
Strand 3
C
181 183parallel
Strand 4
C
207 209parallel
Strand 5
C
225 226parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
169 170parallel
Strand 3
C
195 196parallel
Strand 4
C
213 214parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
155 156first strand
Strand 2
C
175 176parallel
Strand 3
C
201 202parallel
Strand 4
C
219 220parallel
Strand 5
C
235 237parallel
Strand 6
C
242 245anti-parallel
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