Analysis of interatomic Contacts of Structural Units in PDB entry:
8I09

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8I09 entry

There are 12 chains in PDB entry 8I09 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 2	PRO 247
B	PRO 2	PRO 247
C	PRO 2	PRO 247
D	PRO 2	PRO 247
E	PRO 2	LYS 246
F	CYS 3	PRO 247
G	PRO 2	PRO 247
H	PRO 1	PRO 247
I	PRO 2	PRO 247
J	PRO 2	PRO 247
K	PRO 2	PRO 247
L	PRO 2	PRO 247

There are 96 helices in PDB entry 8I09. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	24	Right-handed alpha
Helix 2	AA2	A	24	35	Right-handed alpha
Helix 3	AA3	A	40	54	Right-handed alpha
Helix 4	AA4	A	59	74	Right-handed alpha
Helix 5	AA5	A	75	92	Right-handed alpha
Helix 6	AA6	A	98	105	Right-handed alpha
Helix 7	AA7	A	105	123	Right-handed alpha
Helix 8	AA8	A	125	141	Right-handed alpha
Helix 9	AA9	B	5	24	Right-handed alpha
Helix 10	AB1	B	24	35	Right-handed alpha
Helix 11	AB2	B	40	54	Right-handed alpha
Helix 12	AB3	B	59	74	Right-handed alpha
Helix 13	AB4	B	75	92	Right-handed alpha
Helix 14	AB5	B	98	105	Right-handed alpha
Helix 15	AB6	B	105	123	Right-handed alpha
Helix 16	AB7	B	125	141	Right-handed alpha
Helix 17	AB8	C	5	24	Right-handed alpha
Helix 18	AB9	C	24	35	Right-handed alpha
Helix 19	AC1	C	40	54	Right-handed alpha
Helix 20	AC2	C	59	74	Right-handed alpha
Helix 21	AC3	C	75	92	Right-handed alpha
Helix 22	AC4	C	98	105	Right-handed alpha
Helix 23	AC5	C	105	123	Right-handed alpha
Helix 24	AC6	C	125	141	Right-handed alpha
Helix 25	AC7	D	5	24	Right-handed alpha
Helix 26	AC8	D	27	35	Right-handed alpha
Helix 27	AC9	D	40	54	Right-handed alpha
Helix 28	AD1	D	59	74	Right-handed alpha
Helix 29	AD2	D	75	92	Right-handed alpha
Helix 30	AD3	D	98	105	Right-handed alpha
Helix 31	AD4	D	105	123	Right-handed alpha
Helix 32	AD5	D	125	141	Right-handed alpha
Helix 33	AD6	E	6	24	Right-handed alpha
Helix 34	AD7	E	24	35	Right-handed alpha
Helix 35	AD8	E	40	54	Right-handed alpha
Helix 36	AD9	E	59	74	Right-handed alpha
Helix 37	AE1	E	75	92	Right-handed alpha
Helix 38	AE2	E	98	105	Right-handed alpha
Helix 39	AE3	E	105	123	Right-handed alpha
Helix 40	AE4	E	125	141	Right-handed alpha
Helix 41	AE5	F	6	24	Right-handed alpha
Helix 42	AE6	F	24	35	Right-handed alpha
Helix 43	AE7	F	40	54	Right-handed alpha
Helix 44	AE8	F	59	74	Right-handed alpha
Helix 45	AE9	F	75	92	Right-handed alpha
Helix 46	AF1	F	98	105	Right-handed alpha
Helix 47	AF2	F	105	123	Right-handed alpha
Helix 48	AF3	F	125	141	Right-handed alpha
Helix 49	AF4	G	5	24	Right-handed alpha
Helix 50	AF5	G	24	35	Right-handed alpha
Helix 51	AF6	G	40	54	Right-handed alpha
Helix 52	AF7	G	59	74	Right-handed alpha
Helix 53	AF8	G	75	92	Right-handed alpha
Helix 54	AF9	G	98	105	Right-handed alpha
Helix 55	AG1	G	105	123	Right-handed alpha
Helix 56	AG2	G	125	141	Right-handed alpha
Helix 57	AG3	H	5	24	Right-handed alpha
Helix 58	AG4	H	24	35	Right-handed alpha
Helix 59	AG5	H	40	54	Right-handed alpha
Helix 60	AG6	H	59	74	Right-handed alpha
Helix 61	AG7	H	75	92	Right-handed alpha
Helix 62	AG8	H	98	105	Right-handed alpha
Helix 63	AG9	H	105	123	Right-handed alpha
Helix 64	AH1	H	125	141	Right-handed alpha
Helix 65	AH2	I	5	24	Right-handed alpha
Helix 66	AH3	I	27	35	Right-handed alpha
Helix 67	AH4	I	40	54	Right-handed alpha
Helix 68	AH5	I	59	74	Right-handed alpha
Helix 69	AH6	I	75	92	Right-handed alpha
Helix 70	AH7	I	98	105	Right-handed alpha
Helix 71	AH8	I	105	123	Right-handed alpha
Helix 72	AH9	I	125	141	Right-handed alpha
Helix 73	AI1	J	5	24	Right-handed alpha
Helix 74	AI2	J	24	35	Right-handed alpha
Helix 75	AI3	J	40	54	Right-handed alpha
Helix 76	AI4	J	59	74	Right-handed alpha
Helix 77	AI5	J	75	92	Right-handed alpha
Helix 78	AI6	J	98	105	Right-handed alpha
Helix 79	AI7	J	105	123	Right-handed alpha
Helix 80	AI8	J	125	141	Right-handed alpha
Helix 81	AI9	K	6	24	Right-handed alpha
Helix 82	AJ1	K	24	35	Right-handed alpha
Helix 83	AJ2	K	40	54	Right-handed alpha
Helix 84	AJ3	K	59	74	Right-handed alpha
Helix 85	AJ4	K	75	92	Right-handed alpha
Helix 86	AJ5	K	98	105	Right-handed alpha
Helix 87	AJ6	K	105	123	Right-handed alpha
Helix 88	AJ7	K	125	141	Right-handed alpha
Helix 89	AJ8	L	6	24	Right-handed alpha
Helix 90	AJ9	L	24	35	Right-handed alpha
Helix 91	AK1	L	40	54	Right-handed alpha
Helix 92	AK2	L	59	74	Right-handed alpha
Helix 93	AK3	L	75	92	Right-handed alpha
Helix 94	AK4	L	98	105	Right-handed alpha
Helix 95	AK5	L	105	123	Right-handed alpha
Helix 96	AK6	L	125	141	Right-handed alpha

There are 36 sheets in PDB entry 8I09. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	162	164	parallel
Strand 3	A	181	183	parallel
Strand 4	A	207	209	parallel
Strand 5	A	225	226	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	169	170	parallel
Strand 3	A	195	196	parallel
Strand 4	A	213	214	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	157	first strand
Strand 2	A	175	177	parallel
Strand 3	A	201	202	parallel
Strand 4	A	219	220	parallel
Strand 5	A	235	237	parallel
Strand 6	A	242	245	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	144	first strand
Strand 2	B	162	164	parallel
Strand 3	B	181	183	parallel
Strand 4	B	207	209	parallel
Strand 5	B	225	226	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	169	170	parallel
Strand 3	B	195	196	parallel
Strand 4	B	213	214	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	175	177	parallel
Strand 3	B	201	202	parallel
Strand 4	B	219	220	parallel
Strand 5	B	235	237	parallel
Strand 6	B	242	245	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	144	first strand
Strand 2	C	162	164	parallel
Strand 3	C	181	183	parallel
Strand 4	C	207	209	parallel
Strand 5	C	225	226	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	169	170	parallel
Strand 3	C	195	196	parallel
Strand 4	C	213	214	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	155	157	first strand
Strand 2	C	175	177	parallel
Strand 3	C	201	202	parallel
Strand 4	C	219	220	parallel
Strand 5	C	235	237	parallel
Strand 6	C	242	245	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	143	144	first strand
Strand 2	D	163	164	parallel
Strand 3	D	181	183	parallel
Strand 4	D	207	209	parallel
Strand 5	D	225	226	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	169	170	parallel
Strand 3	D	195	196	parallel
Strand 4	D	213	214	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	155	157	first strand
Strand 2	D	175	177	parallel
Strand 3	D	201	202	parallel
Strand 4	D	219	220	parallel
Strand 5	D	235	237	parallel
Strand 6	D	242	245	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	144	first strand
Strand 2	E	163	164	parallel
Strand 3	E	181	183	parallel
Strand 4	E	207	209	parallel
Strand 5	E	225	226	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	169	170	parallel
Strand 3	E	195	196	parallel
Strand 4	E	213	214	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	155	157	first strand
Strand 2	E	175	177	parallel
Strand 3	E	201	202	parallel
Strand 4	E	219	220	parallel
Strand 5	E	235	237	parallel
Strand 6	E	242	245	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	143	144	first strand
Strand 2	F	163	164	parallel
Strand 3	F	181	183	parallel
Strand 4	F	207	209	parallel
Strand 5	F	225	226	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	150	first strand
Strand 2	F	169	170	parallel
Strand 3	F	195	196	parallel
Strand 4	F	213	214	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	155	157	first strand
Strand 2	F	175	177	parallel
Strand 3	F	201	202	parallel
Strand 4	F	219	220	parallel
Strand 5	F	235	237	parallel
Strand 6	F	242	245	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	143	144	first strand
Strand 2	G	163	164	parallel
Strand 3	G	181	183	parallel
Strand 4	G	207	209	parallel
Strand 5	G	225	226	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	149	150	first strand
Strand 2	G	169	170	parallel
Strand 3	G	195	196	parallel
Strand 4	G	213	214	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	157	first strand
Strand 2	G	175	177	parallel
Strand 3	G	201	202	parallel
Strand 4	G	219	220	parallel
Strand 5	G	235	237	parallel
Strand 6	G	242	245	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	144	first strand
Strand 2	H	162	164	parallel
Strand 3	H	181	183	parallel
Strand 4	H	207	209	parallel
Strand 5	H	225	226	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	149	150	first strand
Strand 2	H	169	170	parallel
Strand 3	H	195	196	parallel
Strand 4	H	213	214	parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	157	first strand
Strand 2	H	175	177	parallel
Strand 3	H	201	202	parallel
Strand 4	H	219	220	parallel
Strand 5	H	235	237	parallel
Strand 6	H	242	245	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	142	144	first strand
Strand 2	I	162	164	parallel
Strand 3	I	181	183	parallel
Strand 4	I	207	209	parallel
Strand 5	I	225	226	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	149	150	first strand
Strand 2	I	169	170	parallel
Strand 3	I	195	196	parallel
Strand 4	I	213	214	parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	157	first strand
Strand 2	I	175	177	parallel
Strand 3	I	201	202	parallel
Strand 4	I	219	220	parallel
Strand 5	I	235	237	parallel
Strand 6	I	242	245	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	142	144	first strand
Strand 2	J	162	164	parallel
Strand 3	J	181	183	parallel
Strand 4	J	207	209	parallel
Strand 5	J	225	226	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	149	150	first strand
Strand 2	J	169	170	parallel
Strand 3	J	195	196	parallel
Strand 4	J	213	214	parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	157	first strand
Strand 2	J	175	177	parallel
Strand 3	J	201	202	parallel
Strand 4	J	219	220	parallel
Strand 5	J	235	237	parallel
Strand 6	J	242	245	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	142	144	first strand
Strand 2	K	162	164	parallel
Strand 3	K	181	183	parallel
Strand 4	K	207	209	parallel
Strand 5	K	225	226	parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	149	150	first strand
Strand 2	K	169	170	parallel
Strand 3	K	195	196	parallel
Strand 4	K	213	214	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	155	157	first strand
Strand 2	K	175	177	parallel
Strand 3	K	201	202	parallel
Strand 4	K	219	220	parallel
Strand 5	K	235	237	parallel
Strand 6	K	242	245	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	142	144	first strand
Strand 2	L	162	164	parallel
Strand 3	L	181	183	parallel
Strand 4	L	207	209	parallel
Strand 5	L	225	226	parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	149	150	first strand
Strand 2	L	169	170	parallel
Strand 3	L	195	196	parallel
Strand 4	L	213	214	parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	155	157	first strand
Strand 2	L	175	177	parallel
Strand 3	L	201	202	parallel
Strand 4	L	219	220	parallel
Strand 5	L	235	237	parallel
Strand 6	L	242	245	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8I09

Analysis of interatomic Contacts of Structural Units in PDB entry:
8I09